Nair S S - OmicsDI

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Unknown (3188)
Transcriptomics (75)
Proteomics (58)
Genomics (11)
Metabolomics (4)
Models (1)

Organisms

Homo sapiens (75)
Mus musculus (31)
Rattus norvegicus (4)
Caenorhabditis elegans (3)
Oryza sativa (2)
Citrobacter rodentium (2)
Bombus terrestris (2)
Serpentes (2)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Coxiella burnetii (1)
Vibrio cholerae (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (1)
Babesia bigemina (1)
Babesia sp. (1)
Bacteria (1)
Klebsiella pneumoniae (1)
Klebsiella pneumoniae ATCC BAA-2146 (1)
Komagataella phaffii GS115 (1)
Leishmania major strain Friedlin (1)
Mycobacterium tuberculosis H37Rv (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Organisms

Staphylococcus aureus subsp. aureus NCTC 8325 (2)
Citrobacter rodentium (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (79)
pride (50)
MassIVE (6)
ENA (5)
MetaboLights (4)
BioModels (1)
EGA (1)
geo (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (8)
Brain (5)
Liver (5)
Cell suspension culture (3)
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Heart (2)
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Blood (1)
Blood serum (1)
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Esophagus (1)
Feces (1)
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HEK-293T cell (1)
Keratinized cell of the oral mucosa (1)
MCF-10A cell (1)
Neuron development (1)
Neutrophil (1)
OKF-6 cell (1)
Oral epithelium (1)
Oral mucosa squamous cell (1)
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Permanent cell line cell (1)
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Stromal cell (1)
Venom (1)

Disease

Normal (2)
Acinetobacter infectious disease (1)
Acute leukemia (1)
Breast adenocarcinoma (1)
Breast cancer (1)
Chronic kidney disease (1)
Disease free (1)
Esophagus squamous cell carcinoma (1)
Gallbladder carcinoma (1)
Genetic disease (1)
Irritable bowel syndrome (1)
Lung small cell carcinoma (1)
Oral cavity cancer (1)
Pancreatic ductal adenocarcinoma (1)
Rheumatoid arthritis (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (31)
Bottom-up proteomics (11)
Data-dependent acquisition (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
MSE (2)
SWATH MS (2)
Mass spectrometry (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (2)
QExactive (2)
LTQ Orbitrap Velos (2)
Liquid Chromatography MS - negative - reverse phase (2)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion ETD (1)
Q Exactive (1)
Q Exactive HF (1)
Bruker (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2012 (18)
2016 (17)
2015 (13)
2014 (11)
2023 (10)
2018 (8)
2011 (8)
2024 (7)
2022 (7)
2026 (7)
2010 (6)
2013 (5)
2008 (5)
2021 (5)
2020 (4)
2025 (3)
2017 (2)
2007 (2)
2019 (2)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:10037 (1)
CHEBI:132628 (1)
CHEBI:143762 (1)
CHEBI:145828 (1)
CHEBI:149838 (1)
CHEBI:15361 (1)
CHEBI:15428 (1)
CHEBI:16119 (1)
CHEBI:16449 (1)
CHEBI:16454 (1)
CHEBI:16786 (1)
CHEBI:168450 (1)
CHEBI:16870 (1)
CHEBI:168762 (1)
CHEBI:169042 (1)
CHEBI:17234 (1)
CHEBI:173158 (1)
CHEBI:173885 (1)
CHEBI:174300 (1)
CHEBI:175196 (1)
CHEBI:175244 (1)
CHEBI:175569 (1)
CHEBI:175739 (1)
CHEBI:18132 (1)
CHEBI:18186 (1)
CHEBI:182307 (1)
CHEBI:185384 (1)
CHEBI:185474 (1)
CHEBI:192946 (1)
CHEBI:24898 (1)

Metabolite Name

(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
2,3-dihydroxypropyl hexadecanoate (1)
2-Octenoylcarnitine CAR(8:1) (1)
5,8-Dihydroxy-3,5,8-trimethyl-4a,5,6,7,7a,8,9,9a-octahydroazuleno[6,5-b]furan-2(4H)-one (1)
Acetate (1)
Alanine (1)
Aspartate (1)
Austroinulin (1)
Avocadyne Acetate (1)
Campherene-2,13-diol (1)
Cryptotanshinone (1)
Deacetylnomilin (1)
Flavone base + 3O, O-HexA (1)
Gentianamine (1)
Glucose (1)
Glutamate (1)
Glutamine (1)
Glycine (1)
Isoleucine (1)
Isotalatizidine (1)
Isoyatein (1)
Lactate (1)
Leucine (1)
Limocitrin (1)
Lucidenic acid L (1)
Lucidone C (1)
Methyl 4-hydroxycinnamate (1)
Methyl gallate (1)
Methylnissolin-3-O-glucoside (1)
N-cis-Feruloyltyramine (1)

IsPrivate

False (1)

First Public Date

2017 (2)
2022 (1)
2014 (1)
2013 (1)

Classification

bacteria (3)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
57.021464 (1)
71.037114 (1)

Study type

Transcription profiling by array (51)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (5)
ChIP-seq (4)
Unknown experiment type (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (2)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (389)
2025 (373)
2021 (369)
2023 (356)
2024 (304)
2020 (255)
2018 (187)
2019 (178)
2017 (131)
2016 (123)
2015 (117)
2014 (100)
2012 (83)
2013 (60)
2011 (59)
2026 (51)
2010 (40)
2008 (25)
2009 (15)
2007 (11)
2005 (10)
2006 (9)
2000 (6)
2003 (5)
2004 (4)
2002 (3)
2001 (2)
1999 (1)
1998 (1)

Lab affiliation

Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
Adele Niessen Professor of Ophthalmology Vice Chair for Research FM Kirby Center for Molecular Ophthalmology Scheie Eye Institute University of Pennsylvania (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana P.O, Kollam - 690525 Kerala, India, Phone-0476-2803119, 2803110 (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana P.O, Kollam - 690525 Kerala, India, Phone-0476-2803119, 2803110 (lab head) (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore, India (1)
Chair of Proteomics and Bioanalytics, TU Munich (1)
Chair of chromatin replication and architecture, Institute of Cell Biology, University of Edinburgh, School of Biological Sciences Kings Buildings Roger Land Building, room 1.63 Alexander Crum Brown Road Edinburgh EH9 3FF, UK (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, Minnesota 55905 United States (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Department of Neuroscience Baylor College of Medicine Houston, TX US (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Endocrine Research Unit, Mayo Clinic, Rochester MN (1)
Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (1)
Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA, USA School of Medicine and Department of Urology, UCSF, CA, USA Department of Cellular and Molecular Pharmacology, UCSF, CA, USA (1)
Infection Biology (1)
Institue of Bioinformatics Discoverer Building, 7th Floor International Tech Park Whitefield, Bangalore - 560 066 Karnataka, India. (1)
Institute of Bioinformatics, 7th floor, Discoverer Building, International Tech Park, Bangalore, 560 066, India (1)
Institute of Bioinformatics, Unit 1, 7th floor, Discoverer building, ITPL, Whitefield, Bangalore - 560066, Karnataka, India (1)
Johns Hopkins University (1)
Mass Spectrometry Laboratory, Mucin Biology Groups,Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Mayo Clinic (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (1)

Tags

pathogen:bacterium (3)
pathogen (3)
xref:PubMed:28723932 (2)
xref:PubMed:21490962 (1)
xref:EuropePMC:PMC10529486 (1)

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Structural and mechanistic investigations of protein S-glycosyltransferases.

Not available

S-EPMC8688163 | biostudies-literature

The Economic Burden of Non-Alcoholic Steatohepatitis: A Systematic Review.

Not available

S-EPMC9300564 | biostudies-literature

Expression miRNA data from human postmortem putamen samples measured using the NanoString nCounter platform

Background: Molecular adaptations in the striatum mediated by dopamine (DA) denervation or Levodopa (L-dopa) treatment have been implicated with the motor deficits found in Parkinsonâ??s disease (PD). Alterations in glutamatergic neurotransmission and anti-oxidant mechanisms are reported to play imp...

ORGANISM(S): Homo sapiens

2016-06-30 | E-GEOD-77667 | biostudies-arrayexpress

Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs.

Not available

S-EPMC7285187 | biostudies-literature

D1 LTP time window

Nair2016 - Integration of calcium and dopamine signals by D1R-expressing medium-sized spiny neurons This model is described in the article: Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration. Nair AG, Bhalla US, H...

2016-09-16 | MODEL1603270000 | BioModels

Expression mRNA data from human postmortem putamen samples measured using the NanoString nCounter platform

Background: Molecular adaptations in the striatum mediated by dopamine (DA) denervation or Levodopa (L-dopa) treatment have been implicated with the motor deficits found in Parkinsonâ€™s disease (PD). Alterations in glutamatergic neurotransmission and anti-oxidant mechanisms are reported to play imp...

ORGANISM(S): Homo sapiens

2016-06-30 | E-GEOD-77666 | biostudies-arrayexpress

Screening of Family Members of Nonalcoholic Fatty Liver Disease Patients can Detect Undiagnosed Nonalcoholic Fatty Liver Disease Among Them: Is There a Genetic Link?

Not available

S-EPMC8267349 | biostudies-literature

Hybrid Poly(hydroxy urethane)s: Folded-Sheet Morphology and Thermoreversible Adhesion.

Not available

S-EPMC6705089 | biostudies-literature

Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-transferases

Characterization of Glutathione S-transferase activity associated with phase II drug metabolism.

ORGANISM(S): Mus musculus (Mouse)

2018-10-22 | PXD006920 | Pride

Genomic analysis unveils genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages.

Not available

S-EPMC10171690 | biostudies-literature

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