Nair S S - OmicsDI

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Unknown (3178)
Transcriptomics (76)
Proteomics (55)
Genomics (11)
Metabolomics (4)
Models (1)

Organisms

Schizosaccharomyces pombe (47)
Sinorhizobium meliloti BL225C (47)
Sus scrofa domesticus (47)
Saccharomyces cerevisiae (47)
Staphylococcus aureus (47)
Rattus norvegicus (47)
Escherichia coli (47)
Methylohalobius crimeensis 10Ki (47)
Homo sapiens (47)
Shigella flexneri (47)
Allexis (47)
Shigella (47)
Zea mays (47)
Meleagris gallopavo (47)
Medicago truncatula (47)
Listeria monocytogenes (47)
Entamoeba histolytica HM-1:IMSS-A (47)
Solanum tuberosum (47)
Arabidopsis thaliana (47)
Homo sapiens (45)
Mus musculus (22)
Rattus norvegicus (4)
Caenorhabditis elegans (3)
Oryza sativa (2)
Citrobacter rodentium (2)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Coxiella burnetii (1)
Vibrio cholerae (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)

Organisms

Staphylococcus aureus subsp. aureus NCTC 8325 (2)
Citrobacter rodentium (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (80)
pride (47)
MassIVE (6)
ENA (5)
MetaboLights (4)
BioModels (1)
EGA (1)
geo (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (8)
Liver (4)
Brain (3)
Cell suspension culture (3)
Epithelial cell (3)
Blood cell (2)
Epithelium of esophagus (1)
OKF-6 cell (1)
Keratinized cell of the oral mucosa (1)
Adenohypophysis (1)
MCF-10A cell (1)
Oral epithelium (1)
Oral mucosa squamous cell (1)
Stromal cell (1)
Pancreatic ductal cell (1)
Neuron development (1)
Venom (1)
Esophagus (1)
HEK-293T cell (1)
Embryonic stem cell (1)
Blood serum (1)
Feces (1)
Stem cell (1)
Fibroblast (1)
Lung (1)
Permanent cell line cell (1)
Neutrophil (1)
Blood (1)

Disease

Normal (2)
Acinetobacter infectious disease (1)
Gallbladder carcinoma (1)
Genetic disease (1)
Oral cavity cancer (1)
Esophagus squamous cell carcinoma (1)
Lung small cell carcinoma (1)
Irritable bowel syndrome (1)
Pancreatic ductal adenocarcinoma (1)
Chronic kidney disease (1)
Rheumatoid arthritis (1)
Breast cancer (1)
Disease free (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (31)
Bottom-up proteomics (8)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
MSE (2)
SWATH MS (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Mass spectrometry (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (2)
QExactive (2)
LTQ Orbitrap Velos (2)
Liquid Chromatography MS - negative - reverse phase (2)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
Q Exactive (1)
Bruker (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (18)
2016 (17)
2015 (13)
2023 (11)
2014 (11)
2018 (8)
2011 (8)
2010 (7)
2024 (7)
2022 (7)
2013 (5)
2008 (5)
2021 (5)
2020 (4)
2026 (4)
2025 (3)
2017 (2)
2007 (2)
2019 (2)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:16454 (1)
CHEBI:57606 (1)
CHEBI:24996 (1)
CHEBI:29995 (1)
CHEBI:15361 (1)
CHEBI:29987 (1)
CHEBI:30089 (1)
CHEBI:145828 (1)
CHEBI:175196 (1)
CHEBI:149838 (1)
CHEBI:182307 (1)
CHEBI:173885 (1)
CHEBI:175569 (1)
CHEBI:168450 (1)
CHEBI:173158 (1)
CHEBI:16119 (1)
CHEBI:185384 (1)
CHEBI:174300 (1)
CHEBI:143762 (1)
CHEBI:192946 (1)
CHEBI:75839 (1)
CHEBI:175739 (1)
CHEBI:169042 (1)
CHEBI:86904 (1)
CHEBI:132628 (1)
CHEBI:185474 (1)
CHEBI:69081 (1)
CHEBI:175244 (1)
CHEBI:69383 (1)
CHEBI:7775 (1)

Metabolite Name

2-Octenoylcarnitine CAR(8:1) (1)
Sn-Glycero-3-Phosphocholine (1)
O-Phosphocholine (1)
Acetate (1)
Leucine (1)
Methyl gallate (1)
Isoyatein (1)
Cryptotanshinone (1)
Flavone base + 3O, O-HexA (1)
Nerolidyl acetate (1)
Veranisatin B (1)
Limocitrin (1)
Gentianamine (1)
Deacetylnomilin (1)
Austroinulin (1)
Shikimic acid (1)
N-cis-Feruloyltyramine (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
5,8-Dihydroxy-3,5,8-trimethyl-4a,5,6,7,7a,8,9,9a-octahydroazuleno[6,5-b]furan-2(4H)-one (1)
Campherene-2,13-diol (1)
Quercetin-4'-O-glucoside (1)
Lucidenic acid L (1)
Avocadyne Acetate (1)
Notoginsenoside R10 (1)
Methyl 4-hydroxycinnamate (1)
Isotalatizidine (1)
Methylnissolin-3-O-glucoside (1)
Obacunone (1)
2,3-dihydroxypropyl hexadecanoate (1)
Lucidone C (1)

IsPrivate

False (1)

First Public Date

2017 (2)
2022 (1)
2014 (1)
2013 (1)

Classification

bacteria (3)

Modelling Approach

Ordinary differential equation model (1)

Modification

71.037114 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (5)
ChIP-seq (4)
Unknown experiment type (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (2)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (389)
2025 (372)
2021 (369)
2023 (354)
2024 (302)
2020 (254)
2018 (187)
2019 (178)
2017 (131)
2016 (123)
2015 (117)
2014 (100)
2012 (83)
2013 (60)
2011 (59)
2026 (47)
2010 (41)
2008 (25)
2009 (15)
2007 (11)
2005 (10)
2006 (9)
2000 (6)
2003 (5)
2004 (4)
2002 (3)
2001 (2)
1999 (1)
1998 (1)

Lab affiliation

Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
Institute of Bioinformatics, Unit 1, 7th floor, Discoverer building, ITPL, Whitefield, Bangalore - 560066, Karnataka, India (1)
Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine Yenepoya Research Centre Yenepoya (Deemed to be University) University Road, Deralakatte Mangalore 575018, India Phone: 0824-2204668 (Ext:2057) Email:csbmm@yenepoya.edu.in (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore, India (1)
Chair of chromatin replication and architecture, Institute of Cell Biology, University of Edinburgh, School of Biological Sciences Kings Buildings Roger Land Building, room 1.63 Alexander Crum Brown Road Edinburgh EH9 3FF, UK (1)
Institute of Bioinformatics, 7th floor, Discoverer Building, International Tech Park, Bangalore, 560 066, India (1)
Mass Spectrometry Laboratory, Mucin Biology Groups,Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden (1)
Platform Proteome Analysis Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (1)
Platform proteome Analysis Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Regional Centre for Biotechnology, Faridabad, India (1)
Institue of Bioinformatics Discoverer Building, 7th Floor International Tech Park Whitefield, Bangalore - 560 066 Karnataka, India. (1)
Infection Biology (1)
Professor and Deputy Director, Centre for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore 575018, India (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Proteomics Core Unit, Centro Nacional Investigaciones Oncológicas (CNIO), Madrid, Spain (1)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, Minnesota 55905 United States (1)
Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA, USA School of Medicine and Department of Urology, UCSF, CA, USA Department of Cellular and Molecular Pharmacology, UCSF, CA, USA (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana P.O, Kollam - 690525 Kerala, India, Phone-0476-2803119, 2803110 (1)
Endocrine Research Unit, Mayo Clinic, Rochester MN (1)

Tags

pathogen (3)
pathogen:bacterium (3)

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Structural and mechanistic investigations of protein S-glycosyltransferases.

Not available

S-EPMC8688163 | biostudies-literature

The Economic Burden of Non-Alcoholic Steatohepatitis: A Systematic Review.

Not available

S-EPMC9300564 | biostudies-literature

Expression miRNA data from human postmortem putamen samples measured using the NanoString nCounter platform

Background: Molecular adaptations in the striatum mediated by dopamine (DA) denervation or Levodopa (L-dopa) treatment have been implicated with the motor deficits found in Parkinsonâ??s disease (PD). Alterations in glutamatergic neurotransmission and anti-oxidant mechanisms are reported to play imp...

ORGANISM(S): Homo sapiens

2016-06-30 | E-GEOD-77667 | biostudies-arrayexpress

Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs.

Not available

S-EPMC7285187 | biostudies-literature

D1 LTP time window

Nair2016 - Integration of calcium and dopamine signals by D1R-expressing medium-sized spiny neurons This model is described in the article: Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration. Nair AG, Bhalla US, H...

2016-09-16 | MODEL1603270000 | BioModels

Genome-wide map of lysine specific demethylase 1 (LSD1) in mouse embryonic stem cells.

We report the identification of LSD1 binding genomic regions in mouse embryonic stem cells (ESC) by high throughput sequencing. By obtaining over 10 million 36 bp reads of sequence from each chromatin immunoprecipitated DNA, we generated genome-wide maps for LSD1 and histone H3 dimethylated on lysin...

ORGANISM(S): Mus musculus

2012-10-03 | E-GEOD-18515 | biostudies-arrayexpress

Expression mRNA data from human postmortem putamen samples measured using the NanoString nCounter platform

Background: Molecular adaptations in the striatum mediated by dopamine (DA) denervation or Levodopa (L-dopa) treatment have been implicated with the motor deficits found in Parkinsonâ€™s disease (PD). Alterations in glutamatergic neurotransmission and anti-oxidant mechanisms are reported to play imp...

ORGANISM(S): Homo sapiens

2016-06-30 | E-GEOD-77666 | biostudies-arrayexpress

Screening of Family Members of Nonalcoholic Fatty Liver Disease Patients can Detect Undiagnosed Nonalcoholic Fatty Liver Disease Among Them: Is There a Genetic Link?

Not available

S-EPMC8267349 | biostudies-literature

Hybrid Poly(hydroxy urethane)s: Folded-Sheet Morphology and Thermoreversible Adhesion.

Not available

S-EPMC6705089 | biostudies-literature

Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-transferases

Characterization of Glutathione S-transferase activity associated with phase II drug metabolism.

ORGANISM(S): Mus musculus (Mouse)

2018-10-22 | PXD006920 | Pride

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3325 Results

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