Nano-lc/ms/ms tandem mass spectrometry

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Proteomics (1973)
Unknown (96)
Metabolomics (9)
Other (3)
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Homo sapiens (854)
Mus musculus (357)
Arabidopsis thaliana (47)
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cellular organisms (1)
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Repository

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Tissue

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Not Available (3)

Technology Type

Mass Spectrometry (1898)
Shotgun proteomics (1094)
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Affinity purification coupled with mass spectrometry proteomics (217)
Data-dependent acquisition (205)
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Chemical cross-linking coupled with mass spectrometry proteomics (31)
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Mass spectrometry (9)
All-ion fragmentation (7)
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MSE (3)
Mass spectrometry imaging (3)
Metaproteomics (3)
Affinity proteomics (2)
Glycoproteomics (2)
Proteogenomics (2)
DiaPASEF (1)
Immunopeptidomics (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Orbitrap Fusion (4)
Orbitrap Fusion Lumos (4)
Q Exactive HF (4)
Instrument (3)
Q Exactive HF-X (3)
LTQ Orbitrap (2)
LTQ Orbitrap Elite (2)
Q Exactive (2)
1200 series LC/MSD SL (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA) (1)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA), each equipped with a nano-electrospray source, were used for nano LC-MS/MS. (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap XL (1)
LTQ Orbitrap XL ETD (1)
LTQ XL ETD (1)
MS:1000031 (1)
MicrOTOF-Q II (1)
Nano-LC/MS/MS (1)
Nano-electrospray source, were used for nano LC-MS/MS (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive Plus (1)
QExactive (1)
QSTAR XL (1)
SYNAPT G2-Si (1)
Southern University of Science and Technology (1)
TimsTOF Pro 2 (1)

Publication Date

2022 (273)
2025 (240)
2023 (234)
2026 (222)
2024 (222)
2021 (186)
2020 (152)
2019 (122)
2018 (112)
2016 (77)
2017 (76)
2015 (35)
2014 (20)
2013 (2)
2010 (1)
2009 (1)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
4F2_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)
6PGL_HUMAN (1)
8ODP_HUMAN (1)
9606.ENSP00000233596 (1)
9606.ENSP00000268624 (1)
9606.ENSP00000291295 (1)
9606.ENSP00000299157 (1)
9606.ENSP00000330842 (1)
9606.ENSP00000331127 (1)
9606.ENSP00000343200 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)

CHEBI ID

CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16750 (4)
CHEBI:21891 (4)
CHEBI:16020 (3)
CHEBI:17562 (3)
CHEBI:17596 (3)
CHEBI:17802 (3)
CHEBI:178090 (3)
CHEBI:19062 (3)
CHEBI:19065 (3)
CHEBI:19227 (3)
CHEBI:19228 (3)
CHEBI:19229 (3)
CHEBI:20129 (3)
CHEBI:20607 (3)
CHEBI:20794 (3)
CHEBI:69426 (3)
CHEBI:132032 (2)
CHEBI:132033 (2)
CHEBI:132034 (2)
CHEBI:132035 (2)
CHEBI:132038 (2)
CHEBI:132039 (2)
CHEBI:134236 (2)
CHEBI:134237 (2)
CHEBI:134435 (2)
CHEBI:134451 (2)
CHEBI:134459 (2)
CHEBI:134490 (2)

Metabolite Name

1-methyladenosine (3)
1-methylguanosine (3)
1-methylinosine (3)
2'-O-methyladenosine (3)
2'-O-methylcytidine (3)
2'-O-methylguanosine (3)
2'-O-methyluridine (3)
3-methylcytidine (3)
5-methylcytidine (3)
7-methylguanosine (3)
Adenosine (3)
1-methylpseudouridine (2)
2'-O-methylinosine (2)
2-methyladenosine (2)
2-methylguanosine (2)
3-methylpseudouridine (2)
3-methyluridine (2)
4-methylcytidine (2)
5-methyluridine (2)
6-methyladenosine (2)
8-methyladenosine (2)
Cytidine (2)
Guanosine (2)
Guanosine (2)
Inosine (2)
N6-methyladenosine (2)
Pseudouridine (2)
Uridine (2)
13-(Z)-Docosenamide (1)
6-hydroxymethyladenosine (1)

Modification

15.994915 (7)
4-tetrahydrothiazine-3-carboxylic acid (7)
Not available (6)
57.021464 (5)
-17.026549 (3)
42.010565 (3)
-18.010565 (2)
4x(2)H labeled dimethylated residue (2)
79.966331 (2)
N6 (2)
0.984016 (1)
58.005479 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2021 (11)
2020 (11)
2025 (9)
2022 (8)
2014 (8)
2010 (7)
2019 (7)
2018 (7)
2016 (5)
2009 (4)
2017 (4)
2013 (4)
2012 (3)
2024 (2)
2023 (2)
2015 (2)
2011 (1)
2008 (1)
2007 (1)
2004 (1)

Lab affiliation

University of Warwick (8)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (6)
CECAD, University of Cologne (5)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. (5)
Laboratory of Experimental Cancer Research, Department of Human Structure and Repair, Ghent University, Ghent, Belgium (5)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (5)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (5)
University of Dundee (5)
1Clinic of Operative Dentistry, Periodontology and Preventive Dentistry, University Hospital, Saarland University, Kirrberger Strasse building 73, 66421 Homburg/Saar, Germany (4)
Aarhus University, Denmark (4)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (4)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (4)
Department of Biochemistry, University of Oxford (4)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (4)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (4)
Lomonosov Moscow State University (4)
Nestlé Research – Nestlé Institute of Food Safety & Analytical Sciences (4)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (4)
University of Edinburgh (4)
Biochemistry and Molecular Biology Department, Eberly College of Science, Pennsylvania State University, University Park, PA, USA. (3)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany. (3)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (3)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (3)
Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand (3)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Graduate Institute of Natural Products, Chang Gung University, Taoyuan, Taiwan (3)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (3)

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