Nanolc-orbitrap-ms

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Proteomics (1934)
Unknown (39)
Metabolomics (2)
Genomics (1)

Organisms

Homo sapiens (1909)
Mus musculus (1909)
Rattus norvegicus (1909)
Allexis (1908)
Shigella (1908)
Shigella flexneri (1908)
Arabidopsis thaliana (1907)
Callinectes sapidus (1907)
Danio rerio (1907)
Drosophila (1907)
Drosophila melanogaster (1907)
Entamoeba histolytica (1907)
Escherichia coli (1907)
Leishmania major strain Friedlin (1907)
Listeria monocytogenes (1907)
Medicago truncatula (1907)
Methylohalobius crimeensis 10Ki (1907)
Mycobacterium tuberculosis (1907)
Oryza sativa Indica Group (1907)
Physcomitrium patens (1907)
Pseudomonas fluorescens WH6 (1907)
Saccharomyces cerevisiae (1907)
Schizosaccharomyces pombe (1907)
Schizosaccharomyces pombe 972h- (1907)
Homo sapiens (8)
Mus musculus (2)
Rattus norvegicus (1)
Mycobacterium tuberculosis variant bovis BCG (1)
Oryza sativa (1)
Rattus rattus (1)

Repository

pride (1909)
MassIVE (11)
jPOST (9)
iProX (4)
MetaboLights (2)
PAXDB (1)
ENA (1)

Tissue

Cell culture (386)
Epithelial cell (146)
Brain (94)
Colon (68)
Liver (63)
Plant cell (53)
Permanent cell line cell (52)
Kidney (45)
Leaf (40)
HeLa cell (38)
Blood plasma (37)
T cell (36)
Lung (32)
Heart (30)
HCT-116 cell (29)
Blood (28)
Fibroblast (28)
Colon epithelial cell (26)
Macrophage (26)
Root (25)
Cell suspension culture (24)
Blood cell (22)
Skin (22)
Embryonic stem cell (21)
Primary cell (21)
Blood serum (18)
Hepatocyte (18)
Stem cell (17)
Urine (17)
Bone marrow (16)

Disease

Colon cancer (64)
Breast cancer (51)
Disease free (34)
Acute leukemia (19)
Melanoma (18)
Cervix carcinoma (16)
Brain cancer (13)
Cardiovascular system disease (12)
Wounds and Injuries (12)
Lung cancer (11)
Parkinson's disease (11)
Brain glioblastoma multiforme (10)
Prostate cancer (10)
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Lymphoma (9)
Non-small cell lung carcinoma (8)
Prostate adenocarcinoma (8)
Type 2 diabetes mellitus (8)
Alzheimer's disease (7)
Colorectal cancer (7)
Glioblastoma (7)
Obesity (7)
Hepatocellular adenoma (6)
Neuroblastoma (6)
Pancreatic cancer (6)
Plasmodium falciparum malaria (6)
Skin cancer (6)
Chronic myeloid leukemia (5)
Head and neck squamous cell carcinoma (5)
Hepatocellular carcinoma (5)

Technology Type

Mass Spectrometry (1909)
Shotgun proteomics (1086)
Bottom-up proteomics (380)
Affinity purification coupled with mass spectrometry proteomics (230)
Data-dependent acquisition (218)
Gel-based experiment (168)
Data-independent acquisition (69)
Top-down proteomics (46)
Chemical cross-linking coupled with mass spectrometry proteomics (31)
SRM/MRM (29)
SWATH MS (18)
Affinity proteomics (14)
MSE (6)
All-ion fragmentation (5)
Glycoproteomics (4)
Metaproteomics (4)
Gel-free quantification method (3)
Proteogenomics (3)
Mass spectrometry (2)
Immunopeptidomics (2)
DiaPASEF (1)
Gel-based quantification method (1)
HDMSE (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

Orbitrap Eclipse (4)
LTQ Orbitrap XL ETD (2)
LTQ Orbitrap Classic (Thermo Scientific) (2)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Ascend (1)
Orbitrap Fusion Lumos (1)
Orbitrap Fusion Lumos Tribrid Mass Spectrometer (1)
QExactive (1)

Publication Date

2025 (262)
2022 (259)
2021 (233)
2026 (231)
2023 (217)
2024 (150)
2020 (137)
2019 (123)
2018 (117)
2017 (71)
2016 (56)
2015 (41)
2014 (32)
2013 (7)

UNIPROT ID/AC

8030.ENSSSAP00000000096 (1)
8030.ENSSSAP00000000573 (1)
8030.ENSSSAP00000001022 (1)
8030.ENSSSAP00000001240 (1)
8030.ENSSSAP00000001597 (1)
8030.ENSSSAP00000001915 (1)
8030.ENSSSAP00000002059 (1)
8030.ENSSSAP00000002148 (1)
8030.ENSSSAP00000002253 (1)
8030.ENSSSAP00000002671 (1)
8030.ENSSSAP00000002680 (1)
8030.ENSSSAP00000002684 (1)
8030.ENSSSAP00000002690 (1)
8030.ENSSSAP00000002813 (1)
8030.ENSSSAP00000003619 (1)
8030.ENSSSAP00000004421 (1)
8030.ENSSSAP00000004518 (1)
8030.ENSSSAP00000004639 (1)
8030.ENSSSAP00000004862 (1)
8030.ENSSSAP00000004890 (1)
8030.ENSSSAP00000005034 (1)
8030.ENSSSAP00000005299 (1)
8030.ENSSSAP00000005382 (1)
8030.ENSSSAP00000005521 (1)
8030.ENSSSAP00000005671 (1)
8030.ENSSSAP00000006110 (1)
8030.ENSSSAP00000006522 (1)
8030.ENSSSAP00000006671 (1)
8030.ENSSSAP00000006691 (1)
8030.ENSSSAP00000006723 (1)

CHEBI ID

CHEBI:18199 (2)
CHEBI:18272 (2)
CHEBI:27465 (2)
CHEBI:17969 (2)
CHEBI:37713 (2)
CHEBI:17052 (2)
CHEBI:17994 (2)
CHEBI:18319 (2)
CHEBI:48928 (2)
CHEBI:16077 (2)
CHEBI:15996 (2)
CHEBI:17533 (2)
CHEBI:17050 (2)
CHEBI:15721 (2)
CHEBI:15713 (2)
CHEBI:18066 (2)
CHEBI:52742 (2)
CHEBI:16695 (2)
CHEBI:16264 (2)
CHEBI:17659 (2)
CHEBI:17345 (2)
CHEBI:17552 (2)
CHEBI:17013 (2)
CHEBI:14314 (2)
CHEBI:78682 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16027 (2)
CHEBI:15351 (2)
CHEBI:16693 (1)

Metabolite Name

5'-Thymidylic acid (2)
O-phospho-D-serine (2)
UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine (2)
N-Acetyl-D-glucosamine 1,6-bisphosphate (2)
5'-phosphoribosyl-N-formylglycinamide (2)
Sedoheptulose 1,7-bisphosphate (2)
5'-Guanylic acid (2)
Adenosine diphosphate (2)
Uridine diphosphate glucose (2)
Uridine triphosphate (2)
SAICAR (2)
Ribose 1,5-bisphosphate (2)
Glucose-1-phosphate (2)
Shikimate-3-phosphate (2)
Acetyl-CoA (2)
Guanosine 5'-diphosphate (2)
Uridylic acid (2)
Sedoheptulose 7-phosphate (2)
Glucose-6 phosphate (2)
Adenosine 5'-monophosphate (2)
UDP-GlcNAc (2)
Adenosine triphosphate (2)
Guanosine triphosphate (2)
D-Fructose 1,6-bisphosphate (2)
N-Acetyl-L-glutamic acid (2)
Uridine 5'-diphosphate (2)
D-Ribose 5-phosphate (2)
6-phosphogluconic acid (2)
Uridine-5'-diphosphate-N-acetylmuramoyl-L-alanine (1)
Oxiglutatione (1)

First Public Date

2014 (1)

Modification

Not available (8)
2x(15)N labeled L-lysine (6)
4x(15)N labeled L-arginine (5)
4-tetrahydrothiazine-3-carboxylic acid (4)
N6-dimethyl-L-lysine (4)
N6 (3)
+3amu) (2)
15.994915 (2)
42.010565 (2)
57.021464 (2)
-17.026549 (1)
-18.010565 (1)
0.984016 (1)
4x(2)H labeled dimethylated L-lysine (1)

Release Date

2020 (6)
2025 (4)
2021 (4)
2014 (4)
2023 (3)
2015 (3)
2024 (2)
2022 (2)
2017 (2)
2016 (2)
2013 (2)
2018 (1)
2012 (1)
2011 (1)
2010 (1)
2008 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (41)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (36)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (25)
EDyP (18)
Cornell University (12)
USDA-ARS (11)
ETH Zurich (8)
Aarhus University, Denmark (7)
Univ. Bordeaux, Bordeaux Proteome, Bordeaux, France (7)
Vanderbilt University Proteomics Core (7)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. (6)
Plateforme Oncoprot, TBM-Core US 005, F-33000 Bordeaux, France (6)
Wageningen University (6)
Department of Life Science, National Taiwan University (5)
IGMM, CNRS, Univ Montpellier, Montpellier, France (5)
IGMM, CNRS, Université de Montpellier, Montpellier, France (5)
NARO Institute of Crop Science (5)
Research Unit for Molecular Medicine, Department of clinical Medicine, Aarhus University, Aarhus, Denmark (5)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (5)
Harvard Medical School (4)
Institute of Bioorganic Chemistry Polish Academy of Sciences (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (4)
Medical Proteomics Unit, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (4)
Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy (4)
The Institute of Cancer Research (4)
1School of Natural Sciences, Macquarie University, Sydney, NSW, Australia 2Institute for Glyco-core Research (iGCORE), Nagoya University, Aichi, Japan (3)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (3)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (3)
CNIO (3)
Cancer Research UK Manchester Institute (3)

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Protein S-glutathionylation in HeLa cells identified by nanoLC-LTQ-Orbitrap XL MS/MS

Cysteine modifications have been widely detected among different protein in different species. Here, we examined protein glutathionylation in HeLa cells under both untreated and diamide-treated conditions. A strategy using resin-assisted enrichment of glutathionylated proteins or peptides after biot...

ORGANISM(S): Homo sapiens (Human)

2020-04-29 | PXD017717 | Pride

Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO.

Not available

S-EPMC8253486 | biostudies-literature

Analysis of FAIMS for the Study of Affinity-Purified Protein Complexes Using the Orbitrap Ascend Tribrid Mass Spectrometer.

Not available

S-EPMC11643029 | biostudies-literature

Analysis of FAIMS for the study of affinity-purified protein complexes using the orbitrap ascend tribrid mass spectrometer.

Not available

S-EPMC12234230 | biostudies-literature

Oxidative Modifications Switch Modulatory Activities of Urinary Proteins From Inhibiting to Promoting Calcium Oxalate Crystallization, Growth, and Aggregation.

Not available

S-EPMC8551538 | biostudies-literature

Performance comparisons of nano-LC systems, electrospray sources and LC-MS-MS platforms.

Not available

S-EPMC3886563 | biostudies-literature

Mapping differences in salivary gland secretions using dried saliva spots

Dried saliva spot (DSS) sampling is a minimally invasive extraction technique that allows for the spatial mapping of salivary protein distribution in the oral cavity. In conjunction with untargeted nanoLC-Orbitrap-MS/MS analysis, we used DSS to compare the unstimulated proteomes secreted by the paro...

ORGANISM(S): Homo sapiens (Human)

2019-09-04 | PXD012792 | Pride

Saliva Gland secretion Human Proteome

Pediatric Ependymoma: A Proteomics Perspective.

Not available

S-EPMC5369312 | biostudies-literature

Real-Time Eco-AI, Electrophoresis-Correlative Data-Dependent Acquisition with AI-Based Data Processing Broadens Access to Single-Cell Mass Spectrometry Proteomics.

Not available

S-EPMC12582007 | biostudies-literature

Secretome proteomics of THP-1 macrophages under M0, M1, and M2 polarization

This dataset comprises label-free quantitative proteomics of the secretome from human THP-1 serglycin (SRGN) knock-out and wild-type macrophage-like cells differentiated with PMA (M0) and polarized to M1 (LPS + IFN-γ) or M2 (IL-4 + IL-13). The study investigates how macrophage activation states in t...

ORGANISM(S): Homo sapiens (Human)

2026-02-25 | PXD071481 | Pride

Srgn knockout Macrophages Homo sapiens Maxquant Label-free quantification Orbitrap fusion lumos Thp-1 Nanolc-ms/ms Secretome

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1976 Results

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Organisms

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Tissue

Disease

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Instrument Platform

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UNIPROT ID/AC

CHEBI ID

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