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MetabolomicsMetabolome and exposome profiling of the biospecimens from COVID-19 patients in India (Nasopharyngeal swab assay)

INTRODUCTION: COVID-19 has become a global impediment by bringing everything to a halt starting from January 2020. India underwent the lockdown starting from 22nd March 2020 with the sudden spike in the number of COVID-19 patients in major cities and states. This study focus...

2022-01-13 | MTBLS2349 | MetaboLights
Genomicshuman nasopharyngeal metagenome
Nasopharyngeal swab Metagenomic assembly
PRJNA288265 | ENA
ProteomicsDIA-based proteome profiling of nasopharyngeal swabs from COVID-19 patients
We sought to characterize the host response through proteome profiling of nasopharyngeal swab specimens. A mass spectrometer combining trapped ion mobility spectrometry and high-resolution QTOF mass spectrometer with a parallel accumulation-serial fragmentation (PASEF) was deployed for unbiased prot...
ORGANISM(S): Homo sapiens (Human) 
2021-09-10 | PXD025277 | Pride
Nasopharyngeal swabs Timstof Covd-19 Host response Dia 
TranscriptomicsNasopharyngeal Swab Transcriptomics Reveals Distinct Pathogenic Mechanisms in Adenoid Hypertrophy and Allergic Rhinitis
Adenoid hypertrophy (AH) frequently coexists with allergic rhinitis (AR) in children, yet the molecular mechanisms underlying this comorbidity remain unclear. Using nasopharyngeal swab-based transcriptomics—enabling inclusion of healthy pediatric controls previously precluded by ethical constraints—...
ORGANISM(S): Homo sapiens 
2026-08-19 | GSE329964 | GEO
MetabolomicsCharacterizing the nasal metabolome and exposome by LC-HRMS: Opportunities and challenges

The nasal cavity represents a host-microbial interface critical to respiratory defense against viral infections, including those caused by influenza virus, respiratory syncytial virus, rhinovirus or SARS-CoV-2. Although the nasal microbiome itself has been well characterized, the nasal metabolome...

2026-10-22 | MTBLS14409 | MetaboLights
ProteomicsProteome Map of Human nasopharyngeal/oropharyngeal swab samples in VTM media following SARS-CoV-2 infection
A detailed proteomic analysis of the nasopharyngeal/oropharyngeal swab samples collected from normal individuals and individuals infected with SARS-CoV-2 involving high throughput quantitative (iTRAQ) proteomics analysis.
ORGANISM(S): Homo sapiens (Human) 
2022-12-22 | PXD032150 | Pride
Sars-cov-2 Covid-19 
GenomicsNasopharyngeal Swab Transcriptomics Reveals Distinct Pathogenic Mechanisms in Adenoid Hypertrophy and Allergic Rhinitis
Nasopharyngeal Swab Transcriptomics Reveals Distinct Pathogenic Mechanisms in Adenoid Hypertrophy and Allergic Rhinitis
PRJNA1462286 | ENA
ProteomicsMetaproteomic analysis of nasopharyngeal swab samples to identify microbial peptides and potential co-infection status in COVID-19 patients
Respiratory infections disrupt the microbiota in the upper respiratory tract (URT), putting patients at a risk for subsequent infections. During the pandemic, cases of COVID-19 were aggravated by secondary infections because of impaired immunity and medical interventions, which was clearly evident i...
ORGANISM(S): Homo Sapiens 
2025-11-01 | PXD039598 | panorama
ProteomicsA SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples.
SARS-CoV-2 has created a global disease burden infecting >100 million humans in just over a year. In this study, we adopted a SISCAPA-based enrichment approach using anti-peptide antibodies generated against peptides from the nucleocapsid protein of SARS-CoV-2. We developed a targeted workflow in wh...
ORGANISM(S): Homo sapiens (Human) 
2022-06-03 | PXD026273 | Pride
Siscapa Sars-cov-2 Mass spectrometry Parallel reaction monitoring (prm) 
ProteomicsA SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples.
SARS-CoV-2 has created a global disease burden infecting >100 million humans in just over a year. In this study, we adopted a SISCAPA-based enrichment approach using anti-peptide antibodies generated against peptides from the nucleocapsid protein of SARS-CoV-2. We developed a targeted workflow in wh...
ORGANISM(S): Homo sapiens (Human) 
2022-02-16 | PXD028505 | Pride
Siscapa Sars-cov-2 Mass spectrometry Covid-19 Parallel reaction monitoring (prm) 
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