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MetabolomicsEmploying fingerprinting of medicinal plants by means of LC-MS and machine learning for species identification task

A dataset of liquid chromatography-mass spectrometry measurements of medicinal plant extracts from 76 species was generated and used for training and validating plant species identification algorithms. Various strategies for data handling and feature space selection were tested. Constrained Tucke...

2022-04-15 | MTBLS688 | MetaboLights
ProteomicsPhyscomitrella patens secreted endogenous peptides
We used mass spectrometry to comprehensively analyze the endogenous peptide pools generated from functionally active proteins in the secretome fromthe model plant Physcomitrella patens. Treatment with the plant stress hormones methyl jasmonate and salicylic acid induced significant differential chan...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2018-12-13 | PXD009530 | Pride
Phytohormones Endogenous peptides Secretome Lc-ms/ms Physcomitrella patens 
TranscriptomicsAssessment of mutation on expression levels
One lung tumor and its adjacent normal were profiled for expression levels with the Affymetrix HGU133 plus 2.0 array. One lung tumor sample and its adjacent normal were assayed on the Affymetrix HG-U133 plus 2.0 array to assess the effects of mutation on expression.
ORGANISM(S): Homo sapiens 
2011-02-21 | E-GEOD-20578 | biostudies-arrayexpress
GenomicsThe mutation spectrum revealed by paired genome sequences from a lung cancer patient

Whole genome sequencing was applied to tumor and adjacent normal lung tissue in an individual non-small-cell lung cancer patient. We present an analysis of somatic changes identified throughout the tumor genome, including single-nucleotide variants, copy number variants, and large-scale chrom...

phs000299.v1.p1 | EGA
TranscriptomicsAgilent 244A aCGH array for comparison of lung tumor CNA to high-throughput sequencing data
1 lung tumor was profiled for copy-number alterations with the high-resolution Agilent 244A aCGH Array. One lung tumor sample were assayed on the Agilent Human Genome CGH 244A Microarrays with the intent of comparing the genomic alterations reported by the array platform with those reported by high-...
ORGANISM(S): Homo sapiens 
2010-05-27 | E-GEOD-20574 | biostudies-arrayexpress
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