Nc - OmicsDI

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Unknown (70532)
Genomics (2473)
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Organisms

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cellular organisms (1)

Organisms

Homo sapiens (804)
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root metagenome (120)
groundwater metagenome (96)
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soil metagenome (77)
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mouse gut metagenome (5)
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gut metagenome (3)
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Repository

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NODE (1)

Tissue

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Technology Type

Mass Spectrometry (489)
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Illumina HiSeq 2000 (2)
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Unknown (1)
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Instrument Platform

Illumina HiSeq 4000 (29)
Illumina HiSeq 2500 (27)
Illumina NovaSeq 6000 (24)
NextSeq 500 (9)
Illumina HiSeq 2000 (8)
Single cells were captured using the 10x Genomics Chromium Controller. (4)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
Standard molecular biology equipment (per Lexogen SENSE mRNA-seq kit protocol) (2)
NanoDrop ND-1000 spectrophotometer; Agilent 2100 Bioanalyzer (2)
428 [Affymetrix] (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
Centrifuge (4 °C); ice/cold block (1)
Tissue Homogenizer (required to process mucosal tissue for the miRNeasy kit). Refrigerated Centrifuge (4 °C) (required for the miRNeasy protocol). (1)
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G2565BA DNA microarray scanner (1)
10X Chromium Controller (1)
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G2505. Agilent’s Scan Control software v. A.7.01 and Feature Extraction. (1)
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(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
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Publication Date

2013 (232)
2011 (229)
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2004 (8)
2003 (1)
2002 (1)

UNIPROT ID/AC

Q92985 (2)
O96020 (2)
Q01094 (2)
P06400 (2)
P01106 (2)
P01375 (2)
P24864 (2)
P01574 (1)
P30279 (1)
P30281 (1)
P0A7L0 (1)
P0AG67 (1)
Q13309 (1)
Q9UE34 (1)
P24385 (1)
P20248 (1)
P36507 (1)
O14807 (1)
P70392 (1)
O00750 (1)
P04085 (1)
P01127 (1)
Q9GZP0 (1)
Q9NRA1 (1)
Q15198 (1)
P27361 (1)
P04049 (1)
Q13153 (1)
P42574 (1)
P98170 (1)

ENSEMBL ID

ENSP00000345571 (1)
ENSG00000101412 (1)
ENST00000343380 (1)

CHEBI ID

CHEBI:15428 (41)
CHEBI:16811 (32)
CHEBI:17822 (31)
CHEBI:15356 (27)
CHEBI:15611 (24)
CHEBI:17724 (24)
CHEBI:17755 (21)
CHEBI:16856 (20)
CHEBI:17230 (3)
CHEBI:1989 (2)
CHEBI:15635 (2)
CHEBI:17622 (2)
CHEBI:18406 (2)
CHEBI:15637 (2)
CHEBI:15641 (2)
CHEBI:15633 (2)
CHEBI:16474 (2)
CHEBI:24367 (1)
CHEBI:64297 (1)
CHEBI:9574 (1)
CHEBI:5054 (1)
CHEBI:50211 (1)
CHEBI:67016 (1)
CHEBI:33442 (1)
CHEBI:18272 (1)
CHEBI:18349 (1)
CHEBI:17515 (1)
CHEBI:17858 (1)
CHEBI:27470 (1)
CHEBI:15638 (1)

Metabolite Name

Taurine (28)
Glycine (28)
Glutamate (27)
Arginine (27)
Alanine (27)
Choline (27)
Tyrosine (27)
Phenylalanine (27)
Tryptophan (27)
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Valine (25)
Fumarate (25)
Inosine (25)
Carnitine (25)

First Public Date

2025 (456)
2024 (247)
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2019 (196)
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2017 (155)
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2018 (135)
2014 (131)
2020 (127)
2015 (47)
2016 (45)
2013 (23)

Modelling Approach

Ordinary differential equation model (21)
Physiologically based pharmacokinetic model (1)
Constraint-based model (1)

Study status

Recruiting (1)
Completed (1)

Lab affiliation

Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (11)
Pacific Northwest National Laboratory, USA (6)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (4)
North Carolina State University (4)
Novartis Inst. for BioMedical Research (4)
University of Oxford (4)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
Department of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, NC, United States (3)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (3)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (2)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
1. Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 2. Department of Epidemiology, Gillings School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 3. Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Chair, Quantitative Proteomics Director, Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
Daegu Catholic University School of Medicine (2)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (2)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (2)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (2)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States (2)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (2)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA. (2)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA (2)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (2)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (2)
Department:Intergrated biomedical sciences,Division:Chemical biology,Institute of infectious diseases and Molecular medicine(IDM),Faculty of health science, University of Cape Town, South Africa (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)

Keyword

Zinc (1)
Zinc Sulfate (1)
Oxidative stress (1)
Clinical Trial (1)
Gene Therapy (1)
Immunotherapy (1)

IsPrivate

False (25)

Model Flag

Non Miriam (1)
Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (23)
viruses (4)
fungi (3)
protozoa (2)
helminths (1)

Modification

Not available (3)
2x(15)N labeled L-lysine (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated L-lysine (1)

Study type

Transcription profiling by array (1200)
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Human - Methylation microarray (2)
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CUT&RUN (2)
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Differential (1)

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Location

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NC HHEAR Hub Pilot Study within the HHEAR Consortium

Not available

ORGANISM(S): Homo sapiens

ST002103 | MetabolomicsWorkbench

Caridac untargeted lipidomics in Sham or TAC-operated mice pretreated with AAV9-NC or AAV9-cTnT-shSlc9a3

Background: Heart failure with reduced ejection fraction (HFrEF) is characterized by impaired contractility and high mortality. Dysregulation of intracellular ion cycling underlies the decline in cardiac contractility. Modulation of cardiac Na+/H+ and Ca2+ handling is consider...

2026-02-20 | MTBLS13701 | MetaboLights

Streptomyces sp. NC-S4

Streptomyces sp. NC-S4 Genome sequencing

PRJNA1392696 | ENA

Neowestiellopsis persica NC-DW

Neowestiellopsis persica NC-DW Genome sequencing

PRJNA1420027 | ENA

Saccharomyces cerevisiae NC-02

Saccharomyces cerevisiae NC-02 genome sequencing

PRJNA60169 | ENA

NC in rodent ischemic optic neuropathy model

Nostoc commune (NC), an edible cyanobacterium with established antioxidant and an-ti-inflammatory activities, has emerged as a potential functional bioresource with rel-evance to ocular health. In this study, we evaluated the effects of a crude aqueous NC extract in a rodent model of anterior ischem...

ORGANISM(S): Nostoc

2026-06-08 | PXD076497 | Pride

Identifying molecular mechanisms of neural crest (NC) EMT and cell migration

Purpose: To identify differntially expressed transcripts in TP-0903 treated embryos that impair cranila NC EMT and cell migration in zebrafish embryos Methods: zebrafish embryos treated at 13 hpf with 5-7uM TP-0903 and DMSO for 1-, 4- and 8-hrs at 28Â°C. 35 embryos were collected for each treatment....

ORGANISM(S): Danio rerio

2016-02-18 | E-GEOD-72322 | biostudies-arrayexpress

Xylaria flabelliformis strain:NC 1011 | isolate:NC 1011

Xylaria flabelliformis NC 1011 Gene Expression Profiling - CC55.5 transcriptome

PRJNA1386849 | ENA

Xylaria flabelliformis strain:NC 1011 | isolate:NC 1011

Xylaria flabelliformis NC 1011 Gene Expression Profiling - CC4.5 transcriptome

PRJNA1386574 | ENA

Xylaria flabelliformis strain:NC 1011 | isolate:NC 1011

Xylaria flabelliformis NC 1011 Gene Expression Profiling - CC46.5 transcriptome

PRJNA1386942 | ENA

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