Ne - OmicsDI

Show results for

Unknown (24818)
Genomics (741)
Transcriptomics (735)
Proteomics (346)
Metabolomics (60)
Models (16)
Other (11)
Methylation profiling (9)
Genomic (6)
Clinical (3)

Organisms

Homo sapiens (408)
Mus musculus (293)
Rattus norvegicus (36)
Saccharomyces cerevisiae (28)
Arabidopsis thaliana (17)
Drosophila melanogaster (16)
Sus scrofa (14)
Gallus gallus (10)
Schizosaccharomyces pombe (9)
Plasmodium falciparum (5)
Bos taurus (5)
Caenorhabditis elegans (5)
Canis lupus familiaris (5)
Oryza sativa (4)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Pseudomonas aeruginosa (3)
Danio rerio (3)
Mycobacterium tuberculosis (2)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (2)
Pimephales promelas (2)
Populus x canadensis (2)
Papio hamadryas (2)
Propionibacterium freudenreichii subsp. shermanii (2)
Nicotiana tabacum (2)
Solanum lycopersicum (2)
Ovis aries (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Chordata (1)
Mammalia (1)
Propionibacterium freudenreichii (1)

Organisms

Homo sapiens (172)
Mus musculus (116)
algae metagenome (15)
Rattus norvegicus (11)
Drosophila melanogaster (7)
Sus scrofa (6)
soil metagenome (6)
Danio rerio (4)
Schizosaccharomyces pombe (3)
hydrothermal vent metagenome (3)
Corynebacterium glutamicum (2)
Caenorhabditis elegans (2)
Canis lupus familiaris (2)
Bos taurus (2)
Gallus gallus (2)
marine sediment metagenome (2)
Holothuria (1)
Terpsiphone corvina (1)
Azospirillum sp. UFLA02-67 (1)
Clostridium perfringens CP4 (1)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (1)
Pseudotsuga menziesii var. menziesii (1)
Lagopus muta (1)
Artyfechinostomum sufrartyfex (1)
Paragonimus westermani (1)
Xanthomonas vasicola pv. vasculorum (1)
Metarhizium anisopliae (1)
Bouteloua dactyloides (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Parazoanthus axinellae (1)

Repository

ENA (601)
biostudies-arrayexpress (566)
geo (288)
pride (284)
EGA (49)
MetabolomicsWorkbench (32)
MetaboLights (27)
MassIVE (25)
BioModels (16)
iProX (14)
dbGaP (6)
jPOST (4)
PanoramaPublic (4)
NODE (2)
PAXDB (2)
PeptideAtlas (2)
EVA (1)
GPMDB (1)

Tissue

Cell culture (61)
Epithelial cell (20)
Brain (13)
Embryonic stem cell (13)
Blood (9)
Blood plasma (9)
Liver (9)
Cultured cells (8)
Macrophage (8)
Colon (6)
Fibroblast (6)
Kidney (6)
Lung (6)
Permanent cell line cell (6)
Macrophages (4)
Blood (4)
Blood serum (4)
Cell suspension culture (4)
Embryo (4)
Larva (4)
Cells (3)
Feces (3)
B cell (3)
Bone marrow (3)
Cerebrospinal fluid (3)
Fibroblast cells (1)
Bone marrow (1)
Lung (1)
Cerebrospinal fluid (1)
Urine (1)

Disease

Malaria (10)
Disease free (9)
Acute leukemia (5)
Colon cancer (5)
Cancer (4)
Lung small cell carcinoma (4)
Normal (3)
Huntington Disease (3)
Prostate adenocarcinoma (3)
Type 2 diabetes mellitus (3)
Sleeping sickness (2)
Ulcerative colitis (2)
Alzheimers disease (2)
Diabetes (2)
Breast cancer (2)
Cervix carcinoma (2)
Colitis (2)
Multiple myeloma (1)
Cataract (1)
Colorectal carcinoma (1)
Critical chronic obstructive pulmonary disease (1)
Leukemia (1)
Healthy donor tissue (1)
Cervical cancer (1)
Radical resection of gastric and colorectal cancers, pancreaticoduodenectomy (1)
Peritoneal carcinomatosis of colorectal cancer (1)
Colorectal cancer (1)
Not Available (1)
Parasitic infection (1)
Irritable bowel syndrome (1)

Technology Type

Mass Spectrometry (316)
Shotgun proteomics (149)
Bottom-up proteomics (55)
Affinity purification coupled with mass spectrometry proteomics (46)
ESI (31)
Data-dependent acquisition (30)
Gel-based experiment (20)
Mass spectrometry (18)
Top-down proteomics (13)
Data-independent acquisition (8)
SWATH MS (8)
Mass spectrometry assay (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (5)
HDMSE (2)
COMPLETE_GENOMICS, Complete Genomics (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
EI (1)
Affinity proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)
SomaScan affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (22)
Illumina HiSeq 2500 (15)
NextSeq 500 (15)
NextSeq 550 (13)
Illumina HiSeq 2000 (8)
Illumina HiSeq 4000 (8)
Axon GenePix 4000B scanning hardware (5)
Vortex (5)
NextSeq 2000 (5)
Conviron controlled environment chamber (2)
ScanArray Express HT (2)
MinION (2)
BD Influx Cell Sorter (1)
HiSeq 2000 (1)
Illumina Hiseq 2500 (1)
Leica CX3050S cryostat (1)
Hamamatsu NanoZoomer S60 (1)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
ScanArray 4000 [PerkinElmer] (1)
Agilent G2505B scanner (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
ScanArray Express HT [PerkinElmer] (1)
Scanning hardware (1)
Sony SH800S (1)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)

Publication Date

2025 (128)
2024 (107)
2013 (89)
2022 (77)
2014 (74)
2015 (73)
2026 (72)
2012 (70)
2023 (66)
2010 (66)
2020 (63)
2021 (53)
2016 (48)
2019 (40)
2011 (36)
2018 (31)
2008 (31)
2017 (29)
2009 (24)
2007 (22)
2005 (12)
2006 (9)
2004 (3)

UNIPROT ID/AC

P46060 (1)
P18754 (1)
P43487 (1)
P62826 (1)
14310_ARATH (1)
14311_ARATH (1)
14312_ARATH (1)
14332_ARATH (1)
14333_ARATH (1)
14334_ARATH (1)
14335_ARATH (1)
14336_ARATH (1)
14337_ARATH (1)
14338_ARATH (1)
14339_ARATH (1)
1A110_ARATH (1)
1A112_ARATH (1)
1A11_ARATH (1)
1A16_ARATH (1)
1A17_ARATH (1)
1A18_ARATH (1)
2A5A_ARATH (1)
2A5B_ARATH (1)
2A5D_ARATH (1)
2A5E_ARATH (1)
2A5G_ARATH (1)
2A5K_ARATH (1)
2A5T_ARATH (1)
2A5Z_ARATH (1)
2AAA_ARATH (1)

ENSEMBL ID

ENSG00000180198 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000072849 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:15428 (8)
CHEBI:17268 (6)
CHEBI:16335 (6)
CHEBI:17712 (6)
CHEBI:27570 (5)
CHEBI:18186 (5)
CHEBI:24898 (5)
CHEBI:6650 (5)
CHEBI:28044 (5)
CHEBI:27266 (5)
CHEBI:17750 (5)
CHEBI:18012 (5)
CHEBI:15724 (5)
CHEBI:17596 (5)
CHEBI:17822 (3)
CHEBI:24367 (1)
CHEBI:1989 (1)
CHEBI:15635 (1)
CHEBI:15638 (1)
CHEBI:18272 (1)
CHEBI:17230 (1)
CHEBI:17622 (1)
CHEBI:18406 (1)
CHEBI:15637 (1)
CHEBI:15641 (1)
CHEBI:15633 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:16474 (1)
CHEBI:30751 (1)

Metabolite Name

Myo-Inositol (6)
Arginine (6)
Glyceric acid (6)
Malic acid (6)
Phenylalanine (6)
Tryptophan (6)
Pyroglutamic acid (5)
Pantothenic acid (5)
Methionine (5)
Taurine (5)
Citric acid (5)
Sebacic acid (5)
Mesaconic acid (5)
Lysine (5)
Tyramine (5)
Serine (5)
Mannose (5)
Adenosine (5)
Alanine (5)
Threonine (5)
PC(34:2) (4)
Leucine (4)
Threonic acid (4)
Glycine (4)
Glucuronic acid (4)
Uracil (4)
Glucose 6-phosphate (4)
Citrulline (4)
Carnosine (4)
Benzoic acid (4)

First Public Date

2025 (117)
2024 (99)
2026 (78)
2023 (60)
2022 (39)
2014 (36)
2021 (35)
2020 (33)
2019 (25)
2015 (24)
2017 (16)
2016 (15)
2013 (12)
2018 (11)
2010 (1)

Modelling Approach

Ordinary differential equation model (8)
Constraint-based model (6)

Study status

Not yet recruiting (3)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Univeristy of Georgia (5)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (5)
Associate Professor Department of Biochemistry Room 220, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2 (4)
Department of Molecular Microbiology, Washington University School of Medicine, 4940 Parkview Place, Campus Box 8230, St. Louis, MO 63110, USA (3)
Technion Faculty of Medicine and Network Biology Research Laboratories, (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
Babraham Research Campus, Cambridge, UK (2)
Biochemistry and Molecular Biology, University of British Columbia, Canada (2)
Center for Cell Signaling Department of Biochemistry & Molecular Genetics University of Virginia, Charlottesville, VA, USA (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, Australia. (2)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Neurological Sciences, University of Nebraska Medical Center, Omaha NE (2)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
Department of Pharmacology, School of Basic Medical Sciences, Tianjin Medical University (2)
Div. Clinical Protein Science and Imaging, Dept. of Clinical Sciences and Dept. of Biomedical Engineering, Lund University, Sweden (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, NE-50, Cleveland, Ohio 44195, United States. (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
Max Delbrueck Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany. Berlin Institute of Health (BIH), Berlin, Germany. (2)
National Institute of Immunology, New Delhi, India (2)
Oregon Hearing Research Center (2)
School of Life and Environmental Sciences, University of Sydney, NSW Australia (2)
-Department of Microbiology and Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA. -Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Canada. (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (5)

Classification

bacteria (8)
helminths (1)
viruses (1)
protozoa (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
6.020129 (1)
71.037114 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (281)
RNA-seq of coding RNA (78)
ChIP-chip by tiling array (42)
ChIP-seq (34)
ChIP-chip by array (14)
RNA-seq of coding RNA from single cells (13)
Comparative genomic hybridization by array (12)
Methylation profiling by array (10)
CUT&RUN (9)
Transcription profiling by tiling array (7)
Other (7)
Proteomic profiling by array (7)
RNA-seq of non coding RNA (7)
Unknown experiment type (6)
Genotyping by array (5)
DNA-seq (5)
Genotyping by high throughput sequencing (3)
Human - Single-cell sequencing (2)
Translation profiling (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Proteomic profiling by mass spectrometer (2)
GRO-seq (1)
Transcription profiling by SAGE (1)
Metabolomic profiling (1)
Animal - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
RNAi profiling by array (1)
Antigen profiling (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2022 (2655)
2021 (2474)
2023 (2428)
2025 (2303)
2024 (2120)
2020 (2014)
2019 (1686)
2018 (1531)
2017 (1263)
2016 (1201)
2015 (985)
2014 (887)
2013 (672)
2012 (596)
2011 (508)
2010 (471)
2009 (361)
2008 (334)
2026 (291)
2007 (194)
2006 (133)
2005 (97)
2004 (51)
2002 (32)
2003 (31)
2001 (25)
2000 (21)
1998 (10)
1999 (5)
1997 (4)

Location

China (2)
Netherlands (1)

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Metarhizium anisopliae strain:NE

Metarhizium anisopliae strain:NE Genome sequencing

PRJNA1277034 | ENA

Xanthomonas oryzae pv. oryzae strain:NE-8

Xanthomonas oryzae pv. oryzae strain:NE-8 Genome sequencing

PRJNA919198 | ENA

Listeria monocytogenes strain:NE dc0214

Listeria monocytogenes strain:NE dc0214 Genome sequencing

PRJNA241322 | ENA

NE in Chickens

16S rRNA amplicon sequence of ileal mucosa bacteria in broiler chickens challenged with NE

PRJEB40959 | ENA

Transcriptome profiling of NE-4C cells and NE-4C cells with knockdown of Setdb1 by RNA-sequencing

PRJNA791301 | ENA

Effect of W805EC nanoemulsion (NE) on global gene transcription in JawsII dendritic cells in vitro

Nanoemulsion adjuvant affects immune gene expression in dendritic cells. Microarray was used to asses global changes in gene expression in JAWS II dendritic cells upon treatment with nanoemulsion (NE) adjuvant W805EC JawsII cell were incubated with NE formulation for 6 and 24 hours, and RNA was ext...

ORGANISM(S): Mus musculus

2013-11-09 | E-GEOD-51804 | biostudies-arrayexpress

Expression data from NE or CORT exposed ADXSCGX mice eye

PRJNA1274465 | ENA

Cyanobacteria in Lake Tiefer See, NE Germany

TERENO and HGF funded project- Cyanobacteria DNA in Lake Tiefer See near Klocksin, NE Germany

PRJEB40406 | ENA

Gene expression profiling of neuroendocrine (NE) and non-neuroendocrine (non-NE) cells derived from ex vivo cultures of small cell lung cancer (SCLC) circulating tumour cell-derived explant (CDX) model

PRJNA1005252 | ENA

Thlaspi arvense cultivar:NE-1

Thlaspi arvense NE-1 Resequencing

PRJNA1239191 | ENA