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MetabolomicsTranscriptome and metabolome changes in Chinese cedar during cold acclimation reveal the roles of flavonoids in needle discoloration and cold resistance

Cryptomeria fortunei growth and development are usually affected by low temperatures. Despite the evergreen nature of this species, most needles turn yellowish-brown in cold winters. The underlying discoloration mechanisms that cause this phenomenon in response to cold acclimation remain...

2022-08-12 | MTBLS3184 | MetaboLights
TranscriptomicsThe effects of timing of fine needle aspiration biopsies on gene expression profiles in breast cancers
Paired fine needle aspiration biopsies (FNABs) of breast cancers were taken before (PRE) and after (POST) surgeries from 16 patients and compared the cDNA microarray data to determine the genes that were differentially expressed between the FNABs taken at the two time points. The timing of fine need...
ORGANISM(S): Homo sapiens 
2008-09-09 | E-GEOD-12072 | biostudies-arrayexpress
TranscriptomicsExpression data from paired matched breast cancer Fine needle aspiration (FNA) or Core needle biopsies (CBX)
Paired FNA and CBX specimens were prospectively collected from 37 breast cancers before any systemic therapy during a biomarker discovery study at The University of Texas M. D. Anderson Cancer Center. We identified 293 probe sets overexpressed in core biopsies; these included five highly coexpresse...
ORGANISM(S): Homo sapiens 
2011-10-31 | E-GEOD-32518 | biostudies-arrayexpress
ProteomicsProtein identification of BS3 crosslinked Shigella flexneri type III secretion system needle complex
Protein identification of BS3 crosslinked Shigella flexneri type III secretion system needle complex
ORGANISM(S): Shigella flexneri 5a 
2026-05-05 | PXD038227 | Pride
Shigella flexneri Type iii secretion system needle complex 
TranscriptomicsApplication of a clinical assay for staging and prognosis of prostate cancer diagnosed in needle core biopsy specimens
Molecular and genomic analysis of microscopic quantities of tumor from formalin-fixed and paraffin-embedded (FFPE) biopsies has many unique challenges. Here we evaluated the feasibility of obtaining transcriptome-wide RNA expression to measure prognostic classifiers from diagnostic prostate needle c...
ORGANISM(S): Homo sapiens 
2016-03-09 | E-GEOD-72220 | biostudies-arrayexpress
GenomicsOrganoid Models of Human Liver Cancers Derived from Tumor Needle Biopsies
Hepatocellular carcinoma (HCC) is the most common primary liver cancer and the second cause of cancer-related mortality worldwide. HCC mainly arises in livers with pre-existing underlying diseases including viral hepatitis, alcoholic liver disease and nonalcoholic steatohepatitis. The multikinase in...
EGAS00001003115 | EGA
TranscriptomicsSubcutaneous adipose tissue from lean and obese subjects
Obtaining adipose tissue samples are paramount to the understanding of human obesity. We have examined the impact of needle-aspirated and surgical biopsy techniques on the study of subcutaneous adipose tissue (scAT) gene expression in both obese and lean subjects. Biopsy sampling methods have a sign...
ORGANISM(S): Homo sapiens 
2008-12-22 | E-GEOD-12050 | biostudies-arrayexpress
GenomicsMETSIM Subcutaneous adipose needle biopsy RNA-seq
METSIM Subcutaneous adipose needle biopsy RNA-seq
PRJNA1004679 | ENA
TranscriptomicsTranscription profiling of rat skeletal muscle after fine needle stimulation
Fine needle stimulation also known as acupuncture is a traditional Chinese medical practice which causes relief of pain. We demonstrated that it caused neovascularization and enhanced recovery of blood perfusion in a ischemic portion of skeletal muscle in rats with hindlimb ischemia. Therefore we...
ORGANISM(S): Rattus norvegicus 
2008-06-16 | E-GEOD-8911 | biostudies-arrayexpress
GenomicsMETSIM Subcutaneous adipose needle biopsy ATAC-seq
METSIM Subcutaneous adipose needle biopsy ATAC-seq
PRJNA1004680 | ENA
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