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TranscriptomicsKinetic gene expression profiles of chicken macrophage HD11 cells in response to endotoxin from Salmonella typhimurium-798
HD11 cells were stimulated with 1 ug/ml endotoxin from ST-798 for 1, 2, 4 and 8 hours Cells were harvested at 1, 2, 4 and 8 hrs post stimulation and RNA was isolated from these cells and microarray was conducted for these RNA samples using affymetrix genechips The microarray experiment was conducted...
ORGANISM(S): Gallus gallus 
2010-10-19 | E-GEOD-23881 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type and mutants of Sultan V barley plants
A large-scale time course expression profiling of wild type (Mla12/Rar1/Rom1) and mutants (mla12-M66, M82 (rar1-1), M100 (rar1-2) and rom1) of barley cultivar Sultan 5 was conducted to understand the molecular mechanisms of delayed powdery mildew resistance. Barley plants were inoculated with powder...
ORGANISM(S): Hordeum vulgare 
2006-08-11 | E-TABM-82 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of soybean roots at three time points after infection with soybean cyst nematodes
Parallel genome-wide expression profile of soybean and soybean cyst nematode at three points during infection 2, 5, 10 days post-inoculation.
ORGANISM(S): Glycine max 
2006-11-30 | E-MEXP-808 | biostudies-arrayexpress
TranscriptomicsExpression of genes and transposons in mop1 mutants and non-mutants
Transposable elements (TEs) comprise a substantial portion of many eukaryotic genomes and are typically transcriptionally silenced. RNA–dependent RNA polymerase 2 (RDR2) is a component of the RNA–directed DNA methylation (RdDM) silencing pathway. In maize, loss of mediator of paramutation1 (mop1) en...
ORGANISM(S): Zea mays 
2009-11-20 | E-GEOD-16789 | biostudies-arrayexpress
TranscriptomicsGlobal regulatory networks active in Pseudomonas syringae B728 during leaf colonization and in response to target environmental stresses: the GacS, SalA, RetS, AlgU, HrpL, RpoN, RpoS, AhlR and AefR regulons
The plant pathogen Pseudomonas syringae pv. syringae B728a grows and survives on leaf surfaces and in the leaf apoplast of its host, bean. Global transcriptome profiling was used to understand the contribution of distinct regulators to B728a fitness and pathogenicity. We performed a transcriptome a...
ORGANISM(S): Pseudomonas syringae 
2014-09-01 | E-GEOD-59273 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of pig non-infected and Salmonella Typhimurium infected mesenteric lymph nodes
A first generation Affymetrix GeneChip® Porcine genome array was used to profile the gene expression in porcine mesenteric lymph nodes over a time course of infection with S. Typhimurium, including the acute (8 hours post inoculation (hpi), 24 hpi, 48 hpi) and chronic (21 days post-inoculation (dpi...
ORGANISM(S): Sus scrofa 
2008-06-15 | E-GEOD-7313 | biostudies-arrayexpress
TranscriptomicsArray-Based Genomic Comparative Hybridization Analysis of Field Strains of Mycoplasma hyopneumoniae
Mycoplasma hyopneumoniae is the causative agent of porcine enzootic pneumonia and a major factor in the porcine respiratory disease complex. A clear understanding of the mechanisms of pathogenesis does not exist although it is clear that M. hyopneumoniae adheres to porcine ciliated epithelium by act...
ORGANISM(S): Mycoplasma hyopneumoniae 
2010-05-27 | E-GEOD-8306 | biostudies-arrayexpress
TranscriptomicsPseudomonas syringae B728a responses to environmental stresses and growth in and on bean leaves
Some strains of the foliar pathogen Pseudomonas syringae are adapted for growth and survival on leaf surfaces and in the leaf interior. Global transcriptome profiling was used to evaluate if these two habitats offer distinct environments for bacteria and thus present distinct driving forces for ada...
ORGANISM(S): Pseudomonas syringae pv. syringae B728a 
2013-01-12 | E-GEOD-42544 | biostudies-arrayexpress
TranscriptomicsEndometrial gene expression profiling in pregnant Meishan and Yorkshire pigs on day 12 of gestation
BACKGROUND: Litter size in pigs is a major factor affecting the profitability in the pig industry. The peri-implantation window in pigs is characterized by the coordinated interactions between the maternal uterine endometrium and the rapidly elongating conceptuses and represents a period of time dur...
ORGANISM(S): Sus scrofa 
2014-05-21 | E-GEOD-46332 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of response to acute caloric restriction in liver and fat of pigs differing in feed efficiency
Residual feed intake (RFI) is a measure of feed efficiency, where low RFI denotes high feed efficiency. Caloric restriction (CR) is associated with feed efficiency in livestock species and to human health benefits such as longevity and cancer prevention. We have developed pig lines that differ in RF...
ORGANISM(S): Sus scrofa 
2010-01-10 | E-GEOD-18359 | biostudies-arrayexpress
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