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MetabolomicsPeak Learning of Mass Spectrometry Imaging Data Using Artificial Neural Networks (Prostate tissue)
Not available
ORGANISM(S): Homo sapiens;Mus musculus 
ST001857 | MetabolomicsWorkbench
MetabolomicsIntergenerational Association of Gut Microbiota and Metabolism with Perinatal Folate Metabolism and Neural Tube Defects (Brain tissue metabolomics)

Neonatal hypoxic-ischemic encephalopathy (HIE) refers to nervous system damage caused by perinatal hypoxia, which is the major cause of long-term neuro-developmental disorders in surviving infants. However, the mechanisms still require further investigation. In this study, we found that the butan...

2022-12-05 | MTBLS4894 | MetaboLights
ProteomicsInterpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis
The incorporation of machine learning methods into proteomics workflows improves the identification of disease-relevant biomarkers and biological pathways. However, machine learning models, such as deep neural networks, typically suffer from lack of interpretability. Here, we present a deep learning...
ORGANISM(S): Homo sapiens (Human) 
2023-09-05 | PXD044264 | Pride
Machine learning Sepsis Neural networks Dia Proteome Aki 
GenomicsChIP-seq on p300, NFI and H3K27ac in mouse neural stem cells
Definition of genome wide transcriptional enhancers by overlap of p300 and H3K27ac and the role of NFI factors in the regulation of mouse neural stem cells
ORGANISM(S): Mus musculus 
2013-08-12 | E-MTAB-1423 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of EpiSCs under epiblastic and neural plate developmental conditions
Epiblast stem cells (EpiSCs) were placed in the epiblastic cell maintenance condition (EpiSC) or in a neural plate developmental condition (Iwafuchi-Doi et al. Dev Biol 352, 354-366, 2011) for one (NPC1) or two (NPC2) days, and expression profiles of total mRNAs were compared. Duplicate EpiSC cultur...
ORGANISM(S): Mus musculus 
2012-12-07 | E-GEOD-38085 | biostudies-arrayexpress
UnknownThe Reference Ability Neural Network Study: Life-time stability of reference-ability neural networks derived from task maps of young adults.
Not available
S-EPMC4691438 | biostudies-literature
TranscriptomicsRegulatory networks define phenotypic classes of human stem cell lines
Stem cells are defined as self-renewing cell populations that can differentiate into multiple distinct cell types. However, hundreds of different human cell lines from embryonic, fetal, and adult sources have been called stem cells, even though they range from pluripotent cells, typified by embryon...
ORGANISM(S): Homo sapiens 
2008-08-25 | E-GEOD-11508 | biostudies-arrayexpress
TranscriptomicsExpression profiling of asense mutant VNC cells in Drosophila embryos
The expression profile of asense mutant neuroblasts and GMCs were compared to wildtype in order to investigate the function of Asense in neural development. Abstract of paper: Neural stem cells must strike a balance between self-renewal and multipotency, and differentiation. Identification of the tr...
ORGANISM(S): Drosophila melanogaster 
2010-06-25 | E-GEOD-18214 | biostudies-arrayexpress
TranscriptomicsFoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis
FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis expression profile between six independant neural stem cell lines (three FoxO null and three wild type) were compared
ORGANISM(S): Mus musculus 
2009-12-31 | E-GEOD-18308 | biostudies-arrayexpress
TranscriptomicsDEVELOPMENTAL MicroRNA EXPRESSION PROFILING OF MURINE NEURAL TUBE
BACKGROUND: Development of the neural tube is a highly orchestrated process relying on precise, spatio-temporal expression of numerous genes as well as hierarchies of signal transduction and gene regulatory networks. Disruption of expression of a number of genes participating in these networks is be...
ORGANISM(S): Rattus norvegicus 
2010-12-01 | E-GEOD-20879 | biostudies-arrayexpress
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