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TranscriptomicsTranscription profiling of human G01518 fibroblasts starved for 16 hours in the presence of 0.1% BSA, and then stimulated for 1, 4, 10 or 24 hours with PDGF-BB (10 ng/ml in starvation medium),
Subconfluent AG01518 fibroblasts were starved for 16 hours in the presence of 0.1% BSA, and then stimulated for 1, 4, 10 or 24 hours with PDGF-BB (10 ng/ml in starvation medium), or left untreated for the same periods of time. Total RNA was isolated using the RNeasy kit (Qiagen). The RNA quality was...
ORGANISM(S): Homo sapiens 
2004-06-30 | E-MEXP-126 | biostudies-arrayexpress
TranscriptomicspsiCLIP of SmB, Prp16 and Prp22 in C, C* and P spliceosomal complexes
Despite the major progress made into spliceosome mechanisms through CryoEM, a major obstacle of this approach is its inability to map the positioning of helicases on the RNA substrate. Here we present a method ‘psiCLIP’ which probes protein-RNA interactions in specific spliceosomal states. The metho...
ORGANISM(S): Saccharomyces cerevisiae 
2020-03-15 | E-MTAB-8895 | biostudies-arrayexpress
TranscriptomicsTransciptome profiling of ovarian cancer cell lines
Transcriptome profiling of matched ovarian cancer cell lines with in vivo platinum sensitivity and resistance by next-generation sequencing
ORGANISM(S): Homo sapiens 
2011-07-31 | E-MTAB-691 | biostudies-arrayexpress
TranscriptomicsExpression data from the CTCR-OV01 study
All patients with suspected ovarian cancer (Raised CA 125 and a complex pelvic mass in a perimenopausal woman) were radiologically staged using CT scan and a chest x-ray. Patients with evidence of intra-abdominal metastasis and/or malignant pleural effusion were approached for entry to the study. Ti...
ORGANISM(S): Homo sapiens 
2009-04-09 | E-GEOD-15622 | biostudies-arrayexpress
TranscriptomicsCopy number profiling of PE ovarian cancer lines
The PEO/PEA series of ovarian cancer cell lines was established in 1988 from progressive samples from three separate cases of ovarian cancer (Langdon et al., 1988). Copy number profiling of PE lines on Illumina Infinium Human1M-Duo v3 BeadChips
ORGANISM(S): Homo sapiens 
2010-06-28 | E-GEOD-18461 | biostudies-arrayexpress
ProteomicsThe $10 proteome: low-cost, deep and quantitative proteome profiling of limited sample amounts using the Orbitrap Astral and timsTOF Ultra 2 mass spectrometers
Mass spectrometry (MS)-based proteomics remains technically demanding and prohibitively expensive for many large-scale or routine applications, with per-sample costs of hundreds of dollars or more. To democratize access to proteomics and facilitate its integration into more high-throughput multiomic...
ORGANISM(S): Homo sapiens (Human) 
2026-02-04 | PXD066701 | Pride
Limited sample input $10 proteome 
ProteomicsHigh-Throughput Label-free Single-Cell Proteomics Enabled by Multicolumn NanoLC with a 5-min Cycle Time
Mass spectrometry (MS)-based single-cell proteomics (SCP) enables proteome-wide analysis at single-cell resolution, offering insights into cellular heterogeneity, biological processes, and disease mechanisms. However, conventional nanoLC-MS workflows are constrained by long gradients and low through...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2026-05-21 | PXD070201 | Pride
5-min cycle time 288 spd High-throughput scp Nanolc-ms/ms 
UnknownAssociations of Transforming Growth Factor-β (TGF-β) with Chronic Kidney Disease Progression in Patients Attending a Tertiary Hospital in Johannesburg, South Africa.
Not available
S-EPMC12838621 | biostudies-literature
UnknownAssessment of spray polyurethane foam worker exposure to organophosphate flame retardants through measures in air, hand wipes, and urine.
Not available
S-EPMC6659107 | biostudies-literature
MetabolomicsCysteamine-bicalutamide combination therapy corrects proximal tubule phenotype in cystinosis
Nephropathic cystinosis is a severe monogenic kidney disorder caused by mutations in CTNS, encoding the lysosomal transporter cystinosin, resulting in lysosomal cystine accumulation. The sole treatment, cysteamine, slows down the disease progression, but does not correct the established renal proxim...
2021-06-24 | MTBLS2538 | MetaboLights
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