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TranscriptomicsTranscriptome analysis of a Staphylococcus aureus mutant defective in the transcription termination factor Rho.
This analysis is part of the study Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions (Mäder, Nicolas et al., to be submitted) where the S. aureus HG001 transcriptome was analyzed under more than 40 different biological conditions. The data rev...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70041 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of minor salivary glands to identify distinct patterns of gene expression in patients with primary Sj¸gren?s syndrome (pSS), a frequent and prototype systemic autoimmune disease
Analysis of targets organs might help to get new insights into the pathogenesis of autoimmune diseases. We used global gene expression profiling of minor salivary glands to identify distinct patterns of gene expression in patients with primary Sjögren’s syndrome (pSS), a frequent and prototype syste...
ORGANISM(S): Homo sapiens 
2005-10-01 | E-MEXP-419 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains
Gene expression patterns were investigated in well-defined genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains. cDNA microarrays were used to search for differentially expressed genes in mouse brain. Four mouse strains, known to differ in susceptibilit...
ORGANISM(S): Mus musculus 
2005-06-30 | E-MEXP-370 | biostudies-arrayexpress
TranscriptomicsTiling array hybridizations of genomic DNA from Staphylococcus aureus HG001.
This analysis is part of the study Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions (Mäder, Nicolas et al., to be submitted) where the S. aureus HG001 transcriptome was analyzed under more than 40 different bilogical conditions. Genomic DNA w...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70042 | biostudies-arrayexpress
TranscriptomicsWhole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions
We report the condition-dependent transcriptome of S. aureus HG001, a derivative of strain NCTC 8325, by strand-specific tiling array hybridizations. More than 40 experimental conditions were investigated ranging from optimal in vitro growth to interaction with host cells. Analyses included the syst...
ORGANISM(S): Staphylococcus aureus 
2016-03-08 | E-GEOD-70040 | biostudies-arrayexpress
TranscriptomicsS-phase time-course of Lachancea kluyveri cells
Haploid cells of Lachancea kluyveri were arrested in G1 phase using Saccharomices cerevisiae alpha factor. After, release in a new media, cells go synchronously through S-phase. One sample is taken every five minutes. Microarrays are used to monitor the change of DNA copy number from 1 to 2, all alo...
ORGANISM(S): Lachancea kluyveri 
2013-02-01 | E-GEOD-37244 | biostudies-arrayexpress
TranscriptomicsRNA-seq of three Spodoptera frugiperda tissues (Midgut, Fat body, Hemocytes), at 2 time-points (8h and 15h) after infestation by entomopathogenic nematodes Steinernema carpocapsae/Xenorhabdus nematophila
Nematodes such as Steinernema carpocapsae are used as organic pesticides because of their ability to prey on live insects. They do so thanks to their symbiotic bacteria, that they release within the hemocoel of insects. In this study we wanted to study how Spodoptera frugiperda, a Lepidoptera pest o...
ORGANISM(S): Spodoptera frugiperda 
2019-12-03 | E-MTAB-7976 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast wild type, set1delta and swd3delta SK1 diploid cells in response to sporulation conditions, in order to determine the influence of histone methylation on the meiotic transcriptome
We analysed the global gene expression profile of wild-type, set1delta and swd3delta Saccharomyces cerevisiae SK1 diploid cells in response to sporulation conditions, in order to determine the influence of histone methylation on the meiotic transcriptome.
ORGANISM(S): Saccharomyces cerevisiae 
2004-05-05 | E-MEXP-41 | biostudies-arrayexpress
ModelsSwat2004_Mammalian_G1_S_Transition
This is the extended model described the article: Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. Swat M, Kel A, Herzel H. Bioinformatics 2004 Jul 10;20(10):1506-11. PMID: 15231543 , doi: ...
2024-09-02 | BIOMD0000000228 | BioModels
ProteomicsS-nitrosation of Arabidopsis thaliana Protein Tyrosine Phosphatase 1 (AtPTP1) prevents its irreversible oxidation by hydrogen peroxide
Tyrosine-specific protein tyrosine phosphatases (Tyr-specific PTPases) are key signalling enzymes catalyzing the removal of the phosphate group from phosphorylated tyrosine residues on target proteins. This post-translational modification notably allows the regulation of mitogen-activated protein ki...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-04-04 | PXD030071 | Pride
Arabidopsis thaliana Post-translational modifications Protein tyrosine phosphatase 1 S-nitrosation Oxidation H2o2 Mitogen-activated protein kinases Nitric oxide 
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