Nie E E - OmicsDI

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Unknown (735)
Transcriptomics (33)
Proteomics (26)
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Homo sapiens (27)
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uncultured bacterium (1)
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Organisms

Pseudogalium paradoxum (1)

Repository

biostudies-arrayexpress (41)
pride (18)
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Tissue

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Disease

Cervix carcinoma (1)
Disease free (1)

Technology Type

Mass Spectrometry (18)
Mass spectrometry (9)
Shotgun proteomics (8)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
Proteogenomics (2)
SWATH MS (2)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (4)
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Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)

Publication Date

2024 (10)
2026 (10)
2015 (9)
2016 (8)
2023 (8)
2013 (4)
2012 (4)
2010 (4)
2025 (3)
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2014 (2)
2008 (2)
2007 (2)
2020 (2)
2005 (1)
2011 (1)
2019 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:15354 (4)
CHEBI:16828 (4)
CHEBI:16217 (3)
CHEBI:16393 (3)
CHEBI:16566 (3)
CHEBI:17015 (3)
CHEBI:17154 (3)
CHEBI:17368 (3)
CHEBI:17509 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17859 (3)
CHEBI:17895 (3)
CHEBI:18176 (3)
CHEBI:18287 (3)
CHEBI:20794 (3)
CHEBI:29019 (3)
CHEBI:30769 (3)
CHEBI:30776 (3)
CHEBI:30860 (3)
CHEBI:34687 (3)
CHEBI:50158 (3)
CHEBI:64563 (3)
CHEBI:73054 (3)
CHEBI:73060 (3)
CHEBI:75168 (3)
CHEBI:86038 (3)
CHEBI:10136 (2)
CHEBI:10724 (2)
CHEBI:116314 (2)

Metabolite Name

Hypoxanthine (4)
L-Tryptophan (4)
7-Aminomethyl-7-carbaguanine (3)
Choline (3)
LysoPE(16:1(9Z)/0:0) (3)
LysoPE(18:2(9Z,12Z)/0:0) (3)
Nicotinic acid (3)
Riboflavin (3)
Sphingosine (3)
(2E)-Decenoyl-ACP (2)
(3beta,5alpha,6beta,22E,24R)-23-Methylergosta-7,22-diene-3,5,6-triol (2)
(Z)-3-(2,4,5-Trimethoxyphenyl)-2-propenal (2)
1-(1-Pyrrolidinyl)-2-propanone (2)
1-(2,3-Dihydro-6,7-dimethyl-1H-pyrrolizin-5-yl)-2-hydroxy-1-propanone (2)
1-(3-Aminopropyl)-4-aminobutanal (2)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (2)
1-Isothiocyanato-7-(methylthio)heptane (2)
1-Methyladenosine (2)
1-Methylhypoxanthine (2)
1H-Pyrrole-2-carboxaldehyde (2)
2-Hydroxypyridine (2)
2-Methylbutyroylcarnitine (2)
2-Methylpiperidine (2)
2-Piperidinone (2)
2-Pyrrolidinone (2)
2-acetyl-1-alkyl-sn-glycero-3-phosphocholine (2)
24,25-Dihydroxyvitamin D (2)
3'-O-Methylguanosine (2)
3,4-Dihydro-2H-1-benzopyran-2-one (2)
3,4-Dihydroxyphenylpropionic acid (2)

IsPrivate

False (2)

First Public Date

2022 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (8)
ChIP-seq (7)
RNA-seq of non coding RNA (3)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
RIP-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (92)
2022 (80)
2023 (78)
2024 (75)
2020 (70)
2021 (63)
2019 (37)
2016 (32)
2017 (30)
2018 (29)
2015 (28)
2009 (27)
2008 (25)
2026 (20)
2010 (18)
2012 (17)
2011 (16)
2014 (15)
2013 (13)
2007 (7)
2006 (1)
2005 (1)
2003 (1)
2002 (1)

Lab affiliation

Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia. (2)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
Associate Professor Magnetic Resonance Mass Spectrometry Perth, Western Australia, Australia (1)
Beijing Advance Innovation Center for Food Nutrition and Human Health, Beijing Laboratory of Food Quality and Safety, Beijing Engineering and Technology Research Center of Food Additives, Beijing Technology and Business University (BTBU), Beijing 100048, China (1)
Deakin University; NeuroAllergy Research Laboratory (NARL) (1)
Department of Biochemistry and Pharmacology, the University of Melbourne, Parkville, Victoria 3052, Australia (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. (1)
Department of Pharmaceutical Sciences, University at Buffalo (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Ocean University of China (1)
School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong, China. (1)
Senior Postdoctoral Fellow Lew Laboratory Immunology Division The Walter and Eliza Hall Institute, Australia (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, School of Marine Sciences, Ningbo University; Ningbo, 315211, P.R. China. (1)
University at Buffalo (1)
University of Pittsburgh (1)

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Design, Expression and Purification of Strongyloides stercoralis IgG4 Immunoreactive Protein (NIE) in Escherichia coli.

Not available

S-EPMC7548455 | biostudies-literature

[(E)-(1-Phenyl-ethyl-idene)amino]-urea methanol monosolvate.

Not available

S-EPMC3051788 | biostudies-literature

ESDN inhibits melanoma progression by blocking E-selectin expression in endothelial cells via STAT3.

Not available

S-EPMC8581997 | biostudies-literature

Design, Synthesis and Characterization of a Visible-Light-Sensitive Molecular Switch and Its PEGylation Towards a Self-Assembling Molecule.

Not available

S-EPMC9541190 | biostudies-literature

The effects of different rootstocks on aroma components, activities and genes expression of aroma-related enzymes in oriental melon fruit

Grafting is widely applied in the cultivation of melon. In this study, 'Qinmi No.1' [Cucumis melo L. (QG)] and 'Ribenxuesong' [Cucurbita maxima Duch. (RG)] were used as rootstocks for 'QingxinYangjiaocui' (Cucumis melo L.). The results showed that grafting with...

2023-11-21 | MTBLS8677 | MetaboLights

A novel MVA-mediated pathway for isoprene production in engineered E. coli.

Not available

S-EPMC4719670 | biostudies-literature

Evaluation of plasma vitamin E and development of proteinuria in hypertensive patients.

Not available

S-EPMC10956724 | biostudies-literature

Quantitative Proteomics Benchmark Dataset to evaluate label-free quantitative methods- LC/Orbitrap Fusion MS analysis of E coli proteomes spiked-in Human proteins at 5 different levels (N=20)

To unbiasedly evaluate the quantitative performance of different quantitative methods, and compare different popular proteomics data processing workflows, we prepared a benchmark dataset where the various levels of spikeed-in E. Coli proteome that true fold change (i.e. 1 fold, 1.5 fold, 2 fold, 2....

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2018-05-16 | PXD003881 | Pride

Proteomic analysis of outer membrane vesicles from Escherichia coli Nissle 1917

We analyzed the protein composition of the OMVs from E. coli Nissle 1917 (EcN) and the OmpA-depleted EcN strain

ORGANISM(S): Escherichia Coli

2024-12-02 | PXD058507 |

Low birthweight in term singletons mediates the association between maternal smoking intensity exposure status and immediate neonatal intensive care unit admission: the E-value assessment.

Not available

S-EPMC7268400 | biostudies-literature

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