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TranscriptomicsComparative genomic hybridization of Burkholderia mallei strain ATCC 23344 before and after passage in human host cells
A whole genome PCR amplicon DNA microarray for B. mallei were fabricated as previously described [7]. Total RNA was isolated from in vitro cultures in LBG medium of B. mallei ATCC 23344, FMH, and JHU. The OD600 of the samples at harvest were all 0.55. The RNAs from FMH and JHU were labeled and hybr...
ORGANISM(S): Burkholderia mallei 
2006-09-22 | E-MEXP-853 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae and Neosartorya fischeri with Aspergillus fumigatus Af293
Genomic DNA from five strains, Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae, and Neosartorya fischeri, were co-hybridized with that of Aspergillus fumigatus Af293 and compared.
ORGANISM(S): Neosartorya fischeri 
2005-05-15 | E-MEXP-333 | biostudies-arrayexpress
TranscriptomicsAspergillus fumigatus RNA-Seq reads control v.s. DTT or TM induced
The unfolded protein response (UPR) is a network of intracellular signaling pathways that supports the ability of the secretory pathway to maintain equilibrium between the load of proteins entering the endoplasmic reticulum (ER) and the protein folding capacity of the ER lumen. Current evidence sug...
ORGANISM(S): Aspergillus fumigatus 
2014-01-13 | E-MTAB-2028 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of the acuM null mutant
Deletion of AcuM caused attenuated virulence in mouse models of Aspergillosis, we carried out the microarry to figure out pathways have been changed to affect the virulence. Transcriptional profiling of Aspergillus fumigatus mycelium comparing mutant ?acuM with wild type Af293, and complemented str...
ORGANISM(S): Aspergillus fumigatus 
2010-10-11 | E-GEOD-24466 | biostudies-arrayexpress
TranscriptomicsAspergillus fumigatus transcriptome under normoxia and hypoxia conditions
To better understand the effect of hypoxia, RNA-Seq technology was used to profile the Aspergillus fumigatus during adaptation to hypoxia at 12, 24 and 36 h time points. Four samples examined: from the fungus grown under normoxia and hypoxia conditions
ORGANISM(S): Aspergillus fumigatus 
2013-03-31 | E-GEOD-30579 | biostudies-arrayexpress
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