Non-structural viral proteins

Show results for

Unknown (979)
Transcriptomics (434)
Genomics (146)
Proteomics (63)
Metabolomics (11)
Other (4)

Organisms

Homo sapiens (202)
Mus musculus (107)
Danio rerio (18)
Drosophila melanogaster (14)
Saccharomyces cerevisiae (13)
Rattus norvegicus (11)
Schizosaccharomyces pombe (8)
Caenorhabditis elegans (6)
Arabidopsis thaliana (6)
Bacillus subtilis subsp. subtilis str. 168 (4)
Mycobacterium tuberculosis (3)
Lemna minor (2)
Synechocystis sp. PCC 6803 (2)
Macaca mulatta (2)
Daphnia magna (2)
Porphyromonas gingivalis (2)
Solanum lycopersicum (2)
Plasmodium falciparum (2)
Pseudomonas aeruginosa (2)
Corynebacterium glutamicum ATCC 13032 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Cereibacter sphaeroides (1)
Clostridium butyricum (1)
Human immunodeficiency virus 1 (1)
Agrobacterium tumefaciens (1)
Culex pipiens (1)
Burkholderia thailandensis E264 (1)
Enchytraeus crypticus (1)
Bacteroides cellulosilyticus (1)
Dorea longicatena DSM 13814 (1)

Organisms

Homo sapiens (18)
Caudoviricetes (3)
Drosophila melanogaster (3)
Mus musculus (2)
Venezuelan equine encephalitis virus (strain TC-83) (1)
Paslahepevirus balayani (1)
Tymoviridae (1)
Dicistroviridae (1)
Narnaviridae (1)
Caulimoviridae (1)
Papillomaviridae (1)
Asfarviridae (1)
Tolivirales (1)
Arteriviridae (1)
Closteroviridae (1)
Ascoviridae (1)
Hypoviridae (1)
Bromoviridae (1)
Tombusviridae (1)
Potyviridae (1)
Secoviridae (1)
Circoviridae (1)
Picornaviridae (1)
Fiersviridae (1)
Caliciviridae (1)
Retroviridae (1)
Arenaviridae (1)
Peribunyaviridae (1)
Orthomyxoviridae (1)
Rhabdoviridae (1)

Repository

biostudies-arrayexpress (450)
ENA (103)
pride (36)
geo (29)
MassIVE (16)
MetaboLights (11)
EGA (4)
iProX (4)
jPOST (3)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (9)
Epithelial cell (4)
Lung (3)
Trophoblast cell (2)
Placenta (2)
Embryonic stem cell (2)
Embryonic cell (2)
Kidney (2)
Others (1)
Somatic cell (1)
Epithelial cell of lung (1)
Hepatoma cell line (1)
Neural progenitor cell (1)
HEK-293 cell (1)
Fibroblast of lung (1)
Kidney cell (1)
Egg (1)
Early embryonic cell (1)
Ovary (1)
Macrophage (1)
Blood plasma (1)
Fibroblast (1)
Primary cell (1)
Permanent cell line cell (1)
Liver (1)
Blood cell (1)
T cell (1)
Blood (1)

Disease

Normal (2)
Coronavirus infectious disease (2)
COVID-19 (2)
HIV encephalitis (1)
Cocaine addiction (1)
Chronic granulomatous disease (1)
Porphyria NOS (1)
IRAK-4 Q293X mutation (1)
S enteritidis (1)
Non-small cell lung carcinoma (1)
Porcine reproductive and respiratory syndrome (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Dengue disease (1)
Zika virus congenital syndrome (1)
Human immunodeficiency virus infectious disease (1)
Influenza (1)
Disease free (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry (10)
Data-dependent acquisition (7)
Bottom-up proteomics (6)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
SRM/MRM (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (29)
NextSeq 500 (18)
Illumina HiSeq 2000 (13)
Illumina HiSeq 4000 (13)
NextSeq 550 (10)
NextSeq 2000 (8)
Illumina HiSeq 2500 (7)
Illumina NovaSeq X (3)
DNBSEQ-G400 (3)
FastPrep‑24 homogenizer (MP Biomedicals) (2)
See manuscript (2)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (2)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (2)
Element AVITI (2)
AB SOLiD 4 System (2)
Illumina Genome Analyzer IIx (2)
Scanning hardware (2)
Illumina MiSeq (2)
Cellranger (1)
FACS BD Aria II & III (1)
Using NEBNext Ultra II DNA Library (1)
KAPA RNA HyperPrep Kit (1)
Macbook Pro 2018 (1)
BRB-seq tool and pipeline (1)
NucleoSpin RNA kit (Macherey-Nagel) (1)
Gilson Minipuls 3 (1)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)

Publication Date

2015 (54)
2014 (53)
2013 (49)
2010 (48)
2025 (43)
2012 (40)
2011 (39)
2016 (28)
2026 (27)
2024 (25)
2021 (21)
2023 (20)
2009 (20)
2022 (18)
2020 (14)
2008 (13)
2017 (12)
2018 (7)
2007 (5)
2019 (4)
2005 (4)
2006 (3)
2004 (1)

UNIPROT ID/AC

Q9Y226 (1)
Q8WWX8 (1)
Q13183 (1)
O15244 (1)
O00476 (1)
Q07837 (1)
Q86XT2 (1)
Q9UEF7 (1)
O43280 (1)
P41181 (1)
O00526 (1)
Q7Z429 (1)
Q9UHI7 (1)
Q96S37 (1)
Q8N695 (1)
P55017 (1)
O75631 (1)
O00322 (1)
A6NI73 (1)
Q6P531 (1)
Q96PX8 (1)
M0QZL2 (1)
Q969E1 (1)
Q6ZQN7 (1)
Q12794 (1)
Q96HP8 (1)
O95460 (1)
Q9H015 (1)
O43511 (1)
P14091 (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:46966 (2)
CHEBI:27082 (2)
CHEBI:25351 (2)
CHEBI:82753 (2)
CHEBI:36315 (2)
CHEBI:17261 (2)
CHEBI:16354 (2)
CHEBI:33984 (2)
CHEBI:86542 (2)
CHEBI:28997 (2)
CHEBI:45441 (2)
CHEBI:40410 (2)
CHEBI:24813 (2)
CHEBI:64390 (2)
CHEBI:89963 (2)
CHEBI:36274 (2)
CHEBI:17306 (2)
CHEBI:15901 (2)
CHEBI:7274 (2)
CHEBI:30653 (2)
CHEBI:27468 (2)
CHEBI:16113 (2)
CHEBI:33508 (2)
CHEBI:26078 (2)
CHEBI:26008 (2)
CHEBI:166830 (2)
CHEBI:16566 (2)
CHEBI:17148 (2)
CHEBI:116314 (2)
CHEBI:17385 (2)

Metabolite Name

Fucose (2)
N-methylhydantoin (2)
Mevalonate (2)
Trehalose (2)
Homoserine (2)
Phenylpyruvate (2)
Pantothenate (2)
Oleamide (2)
N-acetylleucine (2)
Indolelactate (2)
1-methylhistamine (2)
Maltose (2)
Cholesterol (2)
Putrescine (2)
Xanthine (2)
Valine (2)
Uracil (2)
Tyrosine (2)
Tryptophan (2)
Thymine (2)
Threonine (2)
Taurine (2)
Serine (2)
Proline (2)
Phenylalanine (2)
Ornithine (2)
Methionine (2)
Lysine (2)
Leucine (2)
Isoleucine (2)

First Public Date

2013 (53)
2025 (15)
2024 (9)
2026 (7)
2020 (5)
2023 (4)
2021 (4)
2017 (3)
2022 (2)
2014 (1)

Classification

viruses (55)

Study type

Transcription profiling by array (199)
RNA-seq of coding RNA (104)
ChIP-seq (33)
RNA-seq of non coding RNA (23)
Other (11)
RIP-seq (9)
ChIP-chip by tiling array (8)
Transcription profiling by tiling array (8)
Comparative genomic hybridization by array (8)
Cell line - High-throughput sequencing (7)
RNA-seq of total RNA (7)
Transcription profiling by SAGE (5)
Unknown experiment type (5)
RNA-seq of coding RNA from single cells (4)
Ribo-seq (3)
CLIP-seq (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Differential (1)
Human - Methylation microarray (1)
One-color microarray (1)
RNAi profiling by array (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2021 (170)
2022 (147)
2025 (108)
2024 (101)
2015 (94)
2023 (91)
2020 (86)
2014 (78)
2013 (70)
2016 (68)
2012 (63)
2011 (62)
2010 (61)
2019 (47)
2017 (43)
2018 (41)
2009 (27)
2026 (23)
2008 (23)
2007 (11)
2006 (6)
2005 (6)
2004 (3)

Lab affiliation

Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (3)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France (1)
Departments of Biological Sciences and Chemistry, Vanderbilt University (1)
Departments of Biology and Chemistry, Vanderbilt University, USA (1)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC); Dr. Bohr-Gasse 3, 1030 Vienna, Austria. (1)
University of Arizona, Department of Ecology and Evolutionary Biology, Tucson Marine Phage Lab. (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Institute of Virology and Immunology IVI, Bern, Switzerland; Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland (1)
Gladstone Institure for Immunology; The J David Gladstone Institutes; San Francisco, CA, USA (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Sir James Black Centre, Dow Street, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK (1)
Viral Genomics and Vaccination Unit, Department of Virology, Institut Pasteur, CNRS UMR-3569, 75015 Paris, France (1)
Departments of Chemistry, Biological Sciences, Microbiology and Immunology, Vanderbilt University (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Republic of Korea School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Chemistry, Imperial College London, Exhibition Road, London SW7 2AZ, UK (1)
CSSB Centre for Structural Systems Biology, Deutsches Elektronen Synchroton DESY, Leibniz Institute of Virology, Germany; University of Luebeck, Institute for Chemistry and Metabolomics (1)
Medical University of Vienna Center for Pathophysiology, Infectiology and Immunology Institute for Hygiene and Applied Immunology Molecular Immunology Unit A-1090 Vienna, Lazarettgasse 19 Austria (1)
Department of Microbiology and Immunology, University of Otago, New Zealand (1)
University of Greifswald Center of Functional Genomics of Microbes Institute of Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str.8 17489 Greifswald Germany (1)
Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France (1)
Berlin Institute for Medical System Biology @ Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Hannoversche Str. 28, 10115 Berlin Germanyt (1)
Instituto de Biología Molecular y Celular de Rosario-CONICET. Argentina. (1)
Chan Zuckerberg Biohub San Francisco (1)
Institut National de la Santé et de la Recherche Médicale U944, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7212, Institut Universitaire d’Hématologie, Sorbonne Paris Cité, Université Paris Diderot, Hôpital Saint Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France (1)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (1)
Systematic Proteome Research & Bioanalytics, Institute for Experimental Medicine, UKSH, Kiel, Germany (1)
Department of Medical Microbiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, P.O. Box, 9101, 6500 HB Nijmegen, the Netherlands (1)
Institue of Virology, University of Veterinary Medicine Vienna, Austria (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Group leader (1)
Department of Medical Microbiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands (1)

Previous page
1 / 164
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 164
Next page

Sort by:

Relevance

Page size

TARA Oceans Viral Proteins - Illuminating structural proteins in viral "dark matter" with metaproteomics

A grand challenge in biology is the lack of annotation for much of global sequence space. In particular, while microbes and their viruses are critical to Earth System functioning, surveys of their communities in nature routinely return genes of unknown function, particularly for viruses. This hamper...

ORGANISM(S): environmental samples

2016-02-25 | PXD000938 | Pride

RNA-Seq of SARS-CoV-2 Nucleocapsid protein expression in human embryonic kidney cell line HEK293

The RNA genome of the SARS-CoV-2 virus encodes for four structural proteins, 16 non-structural proteins and nine putative accessory factors. A high throughput analysis of interactions between human and SARS-CoV-2 proteins identified multiple interactions of the structural Nucleocapsid (N) protein wi...

ORGANISM(S): Homo sapiens

2024-09-16 | E-MTAB-14342 | biostudies-arrayexpress

Network of interactions between ZIKA virus non-structural proteins and human host proteins

The Zika virus (ZIKV) is a mosquito-borne Flavivirus and can be transmitted through an infected mosquito bite or through human-to-human interaction by sexual activity, blood transfusion, breastfeeding or perinatal exposure. After the 2015-2016 outbreak in Brazil, a strong link between ZIKV infection...

ORGANISM(S): Homo sapiens (Human)

2020-06-18 | PXD014961 | Pride

Zikv Non-structural viral proteins Network Protein-protein interaction

Transcriptional perturbations caused by tumor virus proteins

Genotypic differences greatly influence susceptibility and resistance to disease. Understanding genotype-phenotype relationships requires that phenotypes be viewed as manifestations of network properties, rather than simply as the result of individual genomic variations. Genome sequencing efforts ha...

ORGANISM(S): Homo sapiens

2012-07-19 | E-GEOD-38467 | biostudies-arrayexpress

Comparative multiplexed interactomics of SARS-CoV-2 and homologous coronavirus non-structural proteins identifies unique and shared host-cell dependencies

Human coronaviruses (hCoV) have become a threat to global health and society, as evident from the SARS outbreak in 2002 caused by SARS-CoV-1 and the most recent COVID-19 pandemic caused by SARS-CoV-2. Despite high sequence similarity between SARS-CoV-1 and -2, each strain has distinctive virulence. ...

ORGANISM(S): Severe acute respiratory syndrome-related coronavirus Homo sapiens (Human) Betacoronavirus

2020-12-03 | PXD022017 | Pride

Nsp2 Mitochondria-associated endoplasmic reticulum membrane Affinity purification-mass spectrometry Non-structural proteins Covid-19 Tandem mass tags Nsp4

Intrinsic features of Zika Virus non-structural proteins NS2A and NS4A in the regulation of viral replication.

Not available

S-EPMC9075646 | biostudies-literature

Influenza B virus non-structural protein 1 counteracts ISG15 antiviral activity by sequestering ISGylated viral proteins.

Not available

S-EPMC5025834 | biostudies-literature

Genetic conservation across SARS-CoV-2 non-structural proteins - Insights into possible targets for treatment of future viral outbreaks.

Not available

S-EPMC9999249 | biostudies-literature

Tick-Borne Encephalitis Virus Structural Proteins Are the Primary Viral Determinants of Non-Viraemic Transmission between Ticks whereas Non-Structural Proteins Affect Cytotoxicity.

Not available

S-EPMC4920422 | biostudies-literature

In Silico Analysis of SARS-CoV-2 Non-Structural Proteins Reveals an Interaction with the Host's Heat Shock Proteins That May Contribute to Viral Replications and Development.

Not available

S-EPMC10742040 | biostudies-literature

Previous page
1 / 164
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 164
Next page

Sort by:

Relevance

Page size

1637 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets