Sort   by:  
 Page size 
TranscriptomicsVirtual northern using DNA microarrays for genome wide systematic analysis of mRNA lengths, used to measure mRNAs corresponding to 84% of the annotated open reading frames (ORFs) in the yeast genome
We developed a 'Virtual Northern' method, using DNA microarrays for genome-wide systematic analysis of mRNA lengths. We used this method to measure mRNAs corresponding to 84% of the annotated open reading frames (ORFs) in the S. cerevisiae genome, with high precision and accuracy (measurement errors...
ORGANISM(S): Saccharomyces cerevisiae 
2005-10-27 | E-SMDB-2508 | biostudies-arrayexpress
ProteomicsThe landscape of the SARS-CoV-2 HLA-peptidome
The human leukocyte antigen (HLA)-bound-viral antigens, serve as an immunological signature that can be selectively recognized by T cells. As viruses evolve by acquiring mutations, it is essential to identify a range of viral presented antigens. Utilizing HLA-peptidomics we Identified SARS-CoV-2-der...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-11-01 | MSV000088298 | MassIVE
TranscriptomicsGenome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
We developed a 'Virtual Northern' method, using DNA microarrays for genome-wide systematic analysis of mRNA lengths. We used this method to measure mRNAs corresponding to 84% of the annotated open reading frames (ORFs) in the S. cerevisiae genome, with high precision and accuracy (measurement errors...
ORGANISM(S): Saccharomyces cerevisiae 
2005-12-29 | E-GEOD-3932 | biostudies-arrayexpress
ProteomicsToxin-mediated ribosome stalling as a complementary tool to annotate bacterial ORFs
The goal of this project is to identify proteins upon the expression of VapC4 (Rv0595c).
ORGANISM(S): Mycobacterium tuberculosis H37Rv Bacteria 
2026-04-27 | PXD071737 | Pride
Mycobacterium tuberculosis Orbitrap eclipse 
GenomicsIntergenic ORFs as elementary structural modules of de novo gene birth and protein evolution
Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution
PRJNA727323 | ENA
ProteomicsDeep proteogenomics of a unicellular cyanobacterium
Cyanobacteria are photoautotrophs that profoundly impact the biogeochemical cycles on Earth. Due to their photosynthetic lifestyle that includes the fixation of atmospheric CO2, they are of increasing interest for a sustainable economy. Knowledge of protein expression and regulation is key for under...
ORGANISM(S): Synechocystis sp. PCC 6803 
2024-01-05 | PXD033290 | Pride
Primary metabolism Proteogenomics Photosynthesis Cyanobacteria Protein phosphorylation Synechocystis sp. pcc 6803 Small proteins Gene expression Stress acclimation 
ProteomicsToxin-mediated ribosome stalling as a complementary tool to annotate bacterial ORFs
The goal of this project is to identify newly synthesized proteins upon expression of VapC4 (Rv0595c) in M. tuberculosis mc2 6202 or ∆vapBC4 strains.
ORGANISM(S): Mycobacterium tuberculosis H37Rv Bacteria 
2026-04-27 | PXD071729 | Pride
Orbirtrap eclipse Myobacterium tuberculosis 
UnknownIdentification of novel translated small ORFs in Escherichia coli using complementary ribosome profiling approaches.
Not available
S-EPMC8765432 | biostudies-literature
UnknownConserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii.
Not available
S-EPMC6991124 | biostudies-literature
ProteomicsDeep proteogenomics of a unicellular cyanobacterium
Cyanobacteria are photoautotrophs that profoundly impact the biogeochemical cycles on Earth. Due to their photosynthetic lifestyle that includes the fixation of atmospheric CO2, they are of increasing interest for a sustainable economy. Knowledge of protein expression and regulation is key for under...
ORGANISM(S): Synechocystis sp. PCC 6803 substr. PCC-P 
2024-01-05 | PXD033243 | Pride
Primary metabolism Proteogenomics Photosynthesis Cyanobacteria Protein phosphorylation Synechocystis sp. pcc 6803 Small proteins Gene expression Stress acclimation 
Sort   by:  
 Page size