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TranscriptomicsRNA-Seq of SARS-CoV-2 Nucleocapsid protein expression in human embryonic kidney cell line HEK293
The RNA genome of the SARS-CoV-2 virus encodes for four structural proteins, 16 non-structural proteins and nine putative accessory factors. A high throughput analysis of interactions between human and SARS-CoV-2 proteins identified multiple interactions of the structural Nucleocapsid (N) protein wi...
ORGANISM(S): Homo sapiens 
2024-09-16 | E-MTAB-14342 | biostudies-arrayexpress
ProteomicsA hybrid structural determination approach to investigate protein-RNA complexes of the nucleocapsid protein of SARS-CoV-2
UV-light-induced protein-RNA cross-linking followed by MS analysis was used to identify the interaction sites between the N-terminal (NTD) or C-terminal domain (CTD) of the SARS-CoV-2 nucleocapsid protein and the s2m element of the viral RNA.
ORGANISM(S): Severe acute respiratory syndrome coronavirus 2 
2023-03-13 | PXD037438 | Pride
Nucleocapsid Protein-rna cross-linking Uv cross-linking Protein-rna complexes Sars-cov-2 
ProteomicsNucleocapsid protein from Sars-CoV-2
The project aims at the characterization of the Nucleocapsid protein from Sar-CoV-2
ORGANISM(S): Severe acute respiratory syndrome coronavirus 2 
2025-01-18 | PXD042943 | Pride
Covid-19 Sarscov-2 Nucleocapsid protein 
Genomicssynthetic nucleocapsid strain:I53-50
synthetic nucleocapsid strain:I53-50 Raw sequence reads
PRJNA417493 | ENA
ProteomicsThe analysis of PRRSV nucleocapsid interactome
The porcine reproductive and respiratory virus (PRRSV) is a significant swine disease, causing reproductive failure in sows and complex respiratory failure in sows and complex repiratory syndrome in pigs of all ages. PRRSV is an enveloped +ssRNA virus classified within the family Arteriviridae, whic...
ORGANISM(S): Homo sapiens (Human) 
2026-05-01 | PXD044394 | Pride
Prrsv nidovirus arterivirus nucleocapsid interactome 
GenomicsCharacterization of nucleocapsid-RNA interactions in Rift Valley fever virus infected cells
Characterization of nucleocapsid-RNA interactions in Rift Valley fever virus infected cells
PRJNA772277 | ENA
ProteomicsProteomic identification of recombinant nucleocapsid N protein 40 kDa fragment from SARS-CoV-2
Serological testing is important methodfor diagnosis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Nucleocapsid (N) protein is the most abundant virus derived protein and strong immunogen. We aimed to find its efficient, low-cost production. SARS-CoV-2 ...
ORGANISM(S): SARS coronavirus Sin3765V 
2021-02-17 | PXD023341 | Pride
N protein fragment Covid-19 Prokaryotic expression serological assay Recombinant nucleocapsid protein Sars-cov-2 
ProteomicsTargeted Detection of SARS-CoV-2 Protein Variants by Mass Spectrometry
COVID-19 vaccines are continuing to become more widely available, but accurate and rapid testing remains a crucial tool for slowing the spread of the SARS-CoV-2 virus. Although quantitative reverse transcription-polymerase chain reaction (qRT-PCR) remains the most prevalent testing methodology, nume...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD026795 | Pride
Nucleocapsid Sars-cov-2 Single amino acid protein variants Tandem mass spectrometry 
GenomicsRNA-Seq HEK293T cells transfected with plasmids expressing SARS-CoV-2 Nucleocapsid protein
RNA-Seq HEK293T cells transfected with plasmids expressing SARS-CoV-2 Nucleocapsid protein
PRJEB44716 | ENA
TranscriptomicsCharacterization of nucleocapsid-RNA interactions in Rift Valley fever virus infected cells
Crosslinking immunoprecipitation and sequencing was used to characterize nucleocapsid-RNA interactions in Rift Valley fever virus infection. This data set includes illumina HiSeq paired-end reads of Rift Valley fever virus infected HEK293 cells. The sequencing libraries were generated from nucleocap...
ORGANISM(S): Homo sapiens 
2021-10-22 | GSE186067 | GEO
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