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MetabolomicsSimultaneous Membrane and RNA Binding by Tick-Borne Encephalitis Virus Capsid Protein

Tick-borne encephalitis virus is an enveloped, pathogenic, RNA virus in the family Flaviviridae, genus Flavivirus. Viral particles are formed when the nucleocapsid, consisting of an RNA genome and multiple copies of the capsid protein, buds through the endoplasmic reticulum membrane and acquires ...

2023-01-06 | MTBLS6076 | MetaboLights
TranscriptomicsRNA-Seq of SARS-CoV-2 Nucleocapsid protein expression in human embryonic kidney cell line HEK293
The RNA genome of the SARS-CoV-2 virus encodes for four structural proteins, 16 non-structural proteins and nine putative accessory factors. A high throughput analysis of interactions between human and SARS-CoV-2 proteins identified multiple interactions of the structural Nucleocapsid (N) protein wi...
ORGANISM(S): Homo sapiens 
2024-09-16 | E-MTAB-14342 | biostudies-arrayexpress
ProteomicsA hybrid structural determination approach to investigate protein-RNA complexes of the nucleocapsid protein of SARS-CoV-2
UV-light-induced protein-RNA cross-linking followed by MS analysis was used to identify the interaction sites between the N-terminal (NTD) or C-terminal domain (CTD) of the SARS-CoV-2 nucleocapsid protein and the s2m element of the viral RNA.
ORGANISM(S): Severe acute respiratory syndrome coronavirus 2 
2023-03-13 | PXD037438 | Pride
Nucleocapsid Protein-rna cross-linking Uv cross-linking Protein-rna complexes Sars-cov-2 
ProteomicsNucleocapsid protein from Sars-CoV-2
The project aims at the characterization of the Nucleocapsid protein from Sar-CoV-2
ORGANISM(S): Severe acute respiratory syndrome coronavirus 2 
2025-01-18 | PXD042943 | Pride
Covid-19 Sarscov-2 Nucleocapsid protein 
GenomicsRNA-Seq HEK293T cells transfected with plasmids expressing SARS-CoV-2 Nucleocapsid protein
RNA-Seq HEK293T cells transfected with plasmids expressing SARS-CoV-2 Nucleocapsid protein
PRJEB44716 | ENA
Genomicssynthetic nucleocapsid strain:I53-50
synthetic nucleocapsid strain:I53-50 Raw sequence reads
PRJNA417493 | ENA
ProteomicsProteomic identification of recombinant nucleocapsid N protein 40 kDa fragment from SARS-CoV-2
Serological testing is important methodfor diagnosis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Nucleocapsid (N) protein is the most abundant virus derived protein and strong immunogen. We aimed to find its efficient, low-cost production. SARS-CoV-2 ...
ORGANISM(S): SARS coronavirus Sin3765V 
2021-02-17 | PXD023341 | Pride
N protein fragment Covid-19 Prokaryotic expression serological assay Recombinant nucleocapsid protein Sars-cov-2 
ProteomicsTargeted Detection of SARS-CoV-2 Protein Variants by Mass Spectrometry
COVID-19 vaccines are continuing to become more widely available, but accurate and rapid testing remains a crucial tool for slowing the spread of the SARS-CoV-2 virus. Although quantitative reverse transcription-polymerase chain reaction (qRT-PCR) remains the most prevalent testing methodology, nume...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD026795 | Pride
Nucleocapsid Sars-cov-2 Single amino acid protein variants Tandem mass spectrometry 
ProteomicsSARS-CoV-2 Nucleocapsid protein Native Top-down
Native top-down analysis via ETnoD and HCD on the Orbitrap Eclipse of SARS-CoV-2 nucleocapsid (N) protein heterologously expressed in E. coli
ORGANISM(S): E. Coli 
2021-05-09 | MSV000087391 | MassIVE
GenomicsThe role of SARS-CoV-2 nucleocapsid protein in effecting immune cells and insights on its molecular mechanisms
The role of SARS-CoV-2 nucleocapsid protein in effecting immune cells and insights on its molecular mechanisms
PRJNA992443 | ENA
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