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TranscriptomicsB1 sox (sox2/3/19a/19b) quadruple knockdown in the zebrafish embryo
The B1 SOX transcription factors SOX1/2/3/19 have been implicated in various processes of early embryogenesis. However, their regulatory functions in stages from the blastula to early neurula remain largely unknown, primarily because loss-of-function studies have not been informative to date. In our...
ORGANISM(S): Danio rerio 
2009-12-31 | E-GEOD-18830 | biostudies-arrayexpress
ProteomicsDevelopment of non-targeted proteome analysis of dried blood spots using an automated protein extraction system (
In this study, we developed a simple protein extraction method of dried blood spots (DBS) that potentially meets the throughput required for newborn screening (NBS) and optimized non-targeted proteomic analysis using this method in combination with liquid chromatography coupled mass spectrometry in ...
ORGANISM(S): Homo Sapiens (human) 
2025-08-14 | PXD064701 | JPOST Repository
ProteomicsRapid and Label-Free Structural Proteomics by One-Step Swift Trypsin LiP-MS
We developed a rapid, surface-targeted limited proteolysis workflow, Swift Trypsin LiP-MS (STLiP-MS), to profile proteome-wide structural changes under near-native conditions. STLiP-MS uses a trypsin-immobilized spin column and centrifugation-controlled contact to achieve instantaneous, highly repro...
ORGANISM(S): Homo Sapiens (human) Cellular Organisms 
2026-01-05 | PXD069771 | JPOST Repository
ProteomicsDIA-MS based plasma peptidomics workflow for profiling organ-derived peptides
In this study, we acquired DDA-MS data and DIA-MS data from peptide extracts of plasma and eleven organs (lung, spleen, adrenal gland, kidney, heart, liver, muscle, pancreas, cerebellum, hippocampus, and cerebral cortex). These data were analyzed using FragPipe v23 to obtain peptide identification r...
ORGANISM(S): Mus Musculus (mouse) 
2026-07-13 | PXD073758 | JPOST Repository
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