Olfactory - OmicsDI

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Organisms

Mus musculus (441)
Homo sapiens (97)
Drosophila melanogaster (40)
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Oncorhynchus kisutch (2)
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Megalobrama amblycephala (2)
Leptinotarsa decemlineata (2)
Cotesia vestalis (2)
Xenopus laevis (2)
Mesocricetus auratus (2)

Repository

biostudies-arrayexpress (1411)
ENA (1137)
geo (628)
EGA (83)
pride (77)
MassIVE (43)
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ExpressionAtlas (12)
jPOST (12)
iProX (11)
BioModels (3)
MetabolomicsWorkbench (3)
dbGaP (2)
GPMDB (2)
NODE (2)
PanoramaPublic (2)
EVA (1)
LINCS (1)
PAXDB (1)

Tissue

Olfactory bulb (8)
Cerebellum (5)
Medulla oblongata (4)
Ovary (4)
Spleen (4)
Lung (4)
Heart (4)
Colon (3)
Stomach (3)
Pancreas (3)
Uterus (3)
Submandibular gland (2)
Tongue (2)
Diaphragm (2)
Eye (2)
Zone of skin (2)
Small intestine (2)
Thymus (2)
Placenta (2)
Hippocampal formation (2)
Duodenum (2)
Epididymis (2)
Diencephalon (2)
Spinal cord (2)
Cerebral cortex (2)
Pituitary gland (2)
Vagina (2)
Prostate gland (2)
Adrenal gland (2)
Testis (2)

Disease

Normal (11)
Parkinson's disease (6)
Reference (2)
Schizophrenia (2)
Carcinoma (2)
Not Available (2)
Pulmonary hypertension (1)
Idiopathic myelofibrosis (1)
Cocaine addiction (1)
Mild cystic fibrosis, pulmonary disease (1)
Early-life seizures (1)
Inflammatory bowel disease (1)
Hepatomegaly (1)
Major depression (1)
Benign meningioma (1)
Familial dysautonomia (1)
Crohn's disease (1)
Porphyria NOS (1)
Non-CF (1)
ARR1-SRDX (1)
Neurologically healthy control (1)
Small cell lung carcinoma (1)
Birch pollen allergy (1)
Temporal lobe epilepsy (1)
Not applicable (1)
Healthy (1)
Thymic cancer Thymoma Soft tissue sarcoma Malignant glioma Salivary gland cancer Head and neck mucoepidermoid carcinoma Olfactory neuroblastoma Head and neck mucosal malignant melanoma Ophthalmic malignant melanoma Cancer of the external auditory canal Testicular cancer Cancer of penis Adrenal cancer Malignant mesothelioma Cancer of the small intestine Merkel cell carcinoma Cutaneous lymphoma (Rare cancers listed above) (1)
Squamous Cell Carcinoma of Head and Neck (1)
Thymic cancer Thymoma Soft tissue sarcoma Malignant glioma Salivary gland cancer Head and neck mucoepidermoid carcinoma Olfactory neuroblastoma Head and neck mucosal malignant melanoma Ophthalmic malignant melanoma Cancer of the external auditory canal Testicular cancer Cancer of penis Adrenal cancer Malignant mesothelioma Cancer of the small intestine Merkel cell carcinoma Cutaneous lymphoma (Rare cancers listed above) (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (55)
Mass spectrometry (20)
Mass spectrometry assay (10)
Bottom-up proteomics (8)
SWATH MS (7)
Data-independent acquisition (6)
Gel-based experiment (4)
EI (3)
Affinity purification coupled with mass spectrometry proteomics (3)
ESI (2)
SRM/MRM (2)
Data-dependent acquisition (2)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (32)
Illumina HiSeq 2000 (25)
Illumina NovaSeq 6000 (24)
Illumina HiSeq 4000 (17)
NextSeq 500 (16)
Illumina Genome Analyzer IIx (5)
Vortex (5)
Element AVITI (4)
Affymetrix GeneChip Scanner 3000 7G (4)
Scanning hardware (4)
Illumina NovaSeq X (4)
NextSeq 2000 (4)
418 [Affymetrix] (3)
Illumina MiSeq (3)
BeadBug Benchtop homogenizer (2)
Affymetrix GeneChip(R) HT Scanner (2)
Axon- GenePix4000B (2)
Illumina Genome Analyzer II (2)
N/A (2)
Illumina HiSeq 1000 (2)
HiSeq X Ten (2)
NextSeq 550 (2)
Agilent Tapestation 4200 (1)
Affymetrix GCS 3000 (1)
GeneChip® Pico Kit (Affymetrix) (1)
Affymetrix Clariom™ S (400 Format) (1)
HISAT2, TOPHAT2 (1)
5-Laser BD FACSAria III (1)
Local workstation (1)
Chromium Single Cell 5' Library & Gel Bead Kit v2 (1)

Publication Date

2013 (237)
2014 (183)
2015 (162)
2011 (157)
2010 (146)
2012 (144)
2016 (129)
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2008 (110)
2024 (104)
2026 (92)
2020 (85)
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2022 (78)
2021 (70)
2009 (64)
2007 (61)
2018 (58)
2019 (52)
2017 (50)
2006 (31)
2005 (19)
2004 (5)
2003 (2)

UNIPROT ID/AC

SC6A1_MOUSE (1)
NECA2_MOUSE (1)
PPR17_MOUSE (1)
CTND2_MOUSE (1)
NRIP3_MOUSE (1)
Q1RME4_MOUSE (1)
B4GN2_MOUSE (1)
MCH_MOUSE (1)
APBA1_MOUSE (1)
NEC1_MOUSE (1)
LGI2_MOUSE (1)
CAC1A_MOUSE (1)
NEGR1_MOUSE (1)
HECAM_MOUSE (1)
S0DHL8_MOUSE (1)
BRSK1_MOUSE (1)
ARRC_MOUSE (1)
ENDOU_MOUSE (1)
B2RWC4_MOUSE (1)
SHAN2_MOUSE (1)
KCJ10_MOUSE (1)
F169A_MOUSE (1)
SYBU_MOUSE (1)
LY6H_MOUSE (1)
Q5EER8_MOUSE (1)
RB39B_MOUSE (1)
GRIA3_MOUSE (1)
ASTN1_MOUSE (1)
CNTP2_MOUSE (1)
UN13A_MOUSE (1)

CHEBI ID

CHEBI:30794 (6)
CHEBI:3110 (1)
CHEBI:30633 (1)
CHEBI:15958 (1)
CHEBI:17364 (1)
CHEBI:27870 (1)
CHEBI:16987 (1)
CHEBI:17534 (1)
CHEBI:30912 (1)
CHEBI:17123 (1)
CHEBI:17864 (1)
CHEBI:16427 (1)
CHEBI:31997 (1)
CHEBI:28934 (1)
CHEBI:16525 (1)
CHEBI:27647 (1)
CHEBI:16463 (1)
CHEBI:16082 (1)
CHEBI:34498 (1)
CHEBI:16290 (1)
CHEBI:28888 (1)
CHEBI:44074 (1)
CHEBI:48714 (1)
CHEBI:28453 (1)
CHEBI:17425 (1)
CHEBI:16978 (1)
CHEBI:17173 (1)
CHEBI:16313 (1)
CHEBI:16176 (1)
CHEBI:15816 (1)

Metabolite Name

Xanthine (8)
Inosine (8)
Hypoxanthine (8)
Uracil (7)
Taurine (7)
Creatine (7)
Leucine (6)
Valine (6)
Choline (6)
Histamine (6)
Isoleucine (6)
Adenine (6)
Uridine (6)
Citrulline (5)
Maleic acid (5)
L-Histidine (5)
Methionine (5)
Deoxycholic acid (5)
Myo-Inositol (5)
Tyrosine (5)
Adenosine (5)
Urocanic acid (5)
Threonine (5)
Phenylalanine (5)
Malonic acid (5)
Creatinine (5)
Glycine (4)
Argininosuccinic acid (4)
L-Proline (4)
Nicotinic acid (4)

First Public Date

2014 (139)
2024 (121)
2025 (118)
2026 (106)
2023 (101)
2020 (95)
2022 (90)
2021 (87)
2017 (72)
2019 (58)
2018 (50)
2016 (36)
2015 (36)
2013 (26)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (2)

Study status

Completed (4)
Recruiting (2)

Lab affiliation

DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (5)
Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec and Prague, Czech Republic (2)
Freie Universität Berlin (1)
CNRS, INSERM, Univ. Lille, CHU Lille, Institut Pasteur de Lille, Centre d’Infection et d’Immunité de Lille, 59000 Lille, France (1)
Department of Biology, Università degli studi di Firenze (1)
Biomedical Omics Research, Korea Basic Science Institute, Cheongju, Korea (1)
Prof. Bettina Warscheid Funktionelle Proteomik Biologie II Albert-Ludwigs-Universität Freiburg Schänzlestr. 1 79104 Freiburg (1)
Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic (1)
1. Institute of Clinical Chemistry, University Medical Center Goettingen, Goettingen, Germany; 2. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Goettingen, Germany (1)
jiangxi (1)
Anhui Agricultural University,China (1)
Proteomics Unit, Navarrabiomed-proteored (Spain) (1)
Proteomics Platform, Navarrabiomed (Pamplona-Spain) Proteored-ISCIII (1)
Dysmetabolism in Brain Diseases Lab, CEDOC, NOVA Medical School, Universidade NOVA de Lisboa, Rua CÃƒÂ¢mara Pestana, NÃ‚Âº 6, EdifÃƒÂcio CEDOC II, Office 2.27, 1150-082 Lisboa, Portugal (1)
Lab Head, Medical Mycology Lab (1)
Proteomics Unit, Navarrabiomed-Proteored (Pamplona-Spain) (1)
Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (1)
Glycobiology of olfaction, UMR8576 Unité de glycobiologie structurale et fonctionnelle, France. (1)
Clinical Neuroproteomics Group, Navarrabiomed, Departamento de Salud, UPNA, IdISNA, 31008 Pamplona, Spain (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya(Deemed to be University) (1)
Assisstant professor. Graduate College. Rush University Medical Center. (1)
Keck MS & Proteomics Resource Yale University School of Medicine (1)
Xiangya Hospital & Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China (1)
Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA (1)
Wroclaw University of Environmental and Life Sciences, Department of Reproduction, 50-366 Wrocław, Plac Grunwaldzki 49, Poland (1)
Center for Neuroscience Research, Children's National Hospital, Washington, DC. 20010 USA (1)
Lehrstuhl für Neuroproteomik, Technische Universität München und Neuroproteomik, Deutsches Zentrum für Neurodegenerative Erkrankungen, München (1)
1.Hunan Key Laboratory of Molecular Precision Medicine, Department of Oncology, Xiangya Hospital & Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China (1)
University of Campinas - São Paulo - Brazil (1)
Biology Department, University of Firenze, Italy (1)

Keyword

Erlotinib Hydrochloride (2)
Antineoplastic Agents, Immunological (2)
Antibodies (2)
Immunoglobulins (2)
Antibodies, Monoclonal (2)
Cetuximab (2)
7-hydroxystaurosporine (1)
Methylprednisolone (1)
Methylprednisolone Acetate (1)
Methylprednisolone Hemisuccinate (1)
Prednisolone (1)
Prednisolone acetate (1)
Prednisolone hemisuccinate (1)
Prednisolone phosphate (1)
Irinotecan (1)
Bevacizumab (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (822)
RNA-seq of coding RNA (170)
ChIP-seq (156)
ChIP-chip by tiling array (79)
Methylation profiling by array (31)
Comparative genomic hybridization by array (16)
RNA-seq of non coding RNA (15)
ChIP-chip by array (13)
Proteomic profiling by array (13)
Methylation profiling by high throughput sequencing (13)
Unknown experiment type (10)
RNA-seq of coding RNA from single cells (10)
Other (9)
RNA-seq of total RNA (8)
Transcription profiling by SAGE (4)
Animal - One-color microarray (4)
Animal - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
Single nucleus RNA sequencing (4)
DNA-seq (4)
Human - One-color microarray (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
Human - High-throughput sequencing (2)
Cell line - One-color microarray (2)
CUT&RUN (2)
FAIRE-seq (1)
Animal - Two-color microarray (1)
MNase-seq (1)
MeDIP-seq (1)

Release Date

2022 (830)
2025 (774)
2021 (740)
2023 (702)
2020 (637)
2024 (621)
2016 (473)
2015 (468)
2018 (440)
2019 (439)
2017 (414)
2013 (412)
2014 (400)
2012 (283)
2011 (282)
2010 (251)
2008 (206)
2009 (176)
2007 (113)
2026 (112)
2006 (74)
2005 (54)
2004 (36)
2003 (28)
2001 (20)
2002 (16)
1999 (13)
2000 (9)
1998 (8)
1997 (6)

Location

United States (3)
Japan (2)
Belgium (1)

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Disturbed Microbiota-Metabolites-Immune Interaction Network is Associated with Olfactory Dysfunction in Patients with Chronic Rhinosinusitis

PURPOSE: Olfactory dysfunction (OD) is a debilitating symptom frequently reported by patients with chronic rhinosinusitis (CRS) and it is associated with a dysregulated sinonasal inflammation. However, little information is available about the effect of the inflammation-related n...

2023-05-12 | MTBLS7584 | MetaboLights

Cholic Acid as a Potential Mediator in PD Olfactory Dysfunction: Insights from Nasal Microbiome-Metabolite Interactions Research

Background: Parkinson's disease (PD) is a common neurodegenerative disorder characterized by both motor and non-motor symptoms, including olfactory dysfunction, which often precedes motor symptoms by several years. However, the underlying mechanisms linking olfactory dysfunction in PD to bio...

2025-07-07 | MTBLS12692 | MetaboLights

Transcription profiling of murine olfactory epithelium during neuronal death and replacement to study adult neurogenesis in the olfactory epithelium

Expression profiling of mRNA abundance in the adult mouse olfactory epithelium during replacement of OSNs forced by the bilateral ablation of the olfactory bulbs. The experiment was done on 6 week old male C57Bl/6 mice. Olfactory epithelium tissue samples were collected on days 1, 5, and 7 after b...

ORGANISM(S): Mus musculus

2007-09-04 | E-GEOD-2437 | biostudies-arrayexpress

Transcription profiling of mouse olfactory epithelium frpm Harlequin mutants compared to littermate controls

Microarray analysis of gene expression in the olfactory epithelium of Harlequin mouse as a model of oxidative-stress induced neurodegeneration of olfactory sensory neurons Experiment Overall Design: Olfactory epithelium from Harlequin mutant mice and littermate control mice was microdissected for RN...

ORGANISM(S): Mus musculus

2008-06-14 | E-GEOD-6485 | biostudies-arrayexpress

The human nose harbours a niche of olfactory ecto-mesenchymal stem cells displaying neurogenic and osteogenic properties

We previously identified multipotent stem cells within the lamina propria of the human olfactory mucosa, located in the nasal cavity. We also demonstrated that this cell type differentiates into neural cells and improves locomotor behavior after transplantation in a rat model of Parkinsonâ€™s diseas...

ORGANISM(S): Homo sapiens

2010-10-08 | E-GEOD-24598 | biostudies-arrayexpress

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis

We report RNA sequencing of single olfactory neurons from mouse olfactory epithelium in developmental progression from progenitors to precursors to immature neurons to mature neurons. Most mature neurons expressed only one of ~ 1000 odorant receptor genes (Olfrs) at high levels, whereas many immatur...

ORGANISM(S): Mus musculus

2015-11-25 | E-GEOD-75413 | biostudies-arrayexpress

Transcription profiling of mouse olfactory epithelium to determine the identity of genes regulated at 3 d post-olfactory bulbectomy in the olfactory mucosa of carrier-injected Ccl3-/- mice compared with carrier-injected C57BL/6 mice

The aim was to determine the identity of genes regulated at 3 d post-olfactory bulbectomy in the olfactory mucosa of carrier-injected Ccl3-/- mice compared with carrier-injected C57BL/6 mice. Total RNA from the OE was hybridized to Affymetrix microarrays. A number of chemokine-, cytokine-, and gro...

ORGANISM(S): Mus musculus

2007-10-13 | E-GEOD-1680 | biostudies-arrayexpress

Transcription profiling of olfactory epithelium isolated from wild type and SR-A mutant mice at different time points after bilateral olfactory bulbectomy to understand the temporal gene expression patterns.

Sham and bilateral OBX were performed on wild-type and SR-A mutant mice. Tissue collected 2, 8, 16, and 48 hours following OBX. Expression profiles were determined using Affynetrix MG U74Av2 chips. Experiment Overall Design: olfactory epithelium from 3 wild type 6 week old mice and 3 SR-A 6 week old...

ORGANISM(S): Mus musculus

2007-11-22 | E-GEOD-3455 | biostudies-arrayexpress

Identification of a microRNA regulator for axon guidance in the olfactory bulb of adult mice

Using the highly sensitive miRNA array, we screened 40 microRNAs abundant in the olfactory bulb and we explored the functions of these miRNAs in the olfactory bulb by Gene Ontology and Kyoto Encyclopedia of Genes annotation. The enrichment results indicated that these miRNAs mainly participated in t...

ORGANISM(S): Mus musculus

2014-08-27 | E-GEOD-55463 | biostudies-arrayexpress

Comparison of gene expression profiles in olfactory epithelium from Atf5+/+ and Atf5-/- mice

We have found that the expression pattern of Atf5 is highly restricted to the olfactory system, strongly suggesting that Atf5 is an olfactory sensory neuron-specific transcription factor. To test this possiblity, we compared gene expression profiles in olfactory epithelium (septa and turbinates) fro...

ORGANISM(S): Mus musculus

2012-10-30 | E-GEOD-37609 | biostudies-arrayexpress

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