Oliver S S - OmicsDI

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Unknown (1957)
Transcriptomics (333)
Proteomics (156)
Genomics (111)
Models (25)
Metabolomics (22)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (227)
Mus musculus (125)
Saccharomyces cerevisiae (70)
Drosophila melanogaster (23)
Arabidopsis thaliana (18)
Rattus norvegicus (11)
Candida albicans (9)
Danio rerio (8)
Sus scrofa (4)
Listeria monocytogenes (3)
Saccharomyces cerevisiae S288C (2)
Drosophila pseudoobscura (2)
synthetic construct (2)
Medicago truncatula (2)
Zea mays (2)
Geobacter sulfurreducens (2)
Ovis aries (2)
Caenorhabditis elegans (2)
Drosophila hawaiiensis (1)
Drosophila rhopaloa (1)
Saccharomyces cerevisiae W303 (1)
Drosophila ficusphila (1)
Vitis sp. cv. 'Norton' (1)
Drosophila mojavensis (1)
Saccharomyces paradoxus (1)
Syntrichia ruralis (1)
Rhodopseudomonas palustris CGA009 (1)
Saccharomyces mikatae (1)
Lachancea waltii (1)
Myxococcus xanthus (1)

Organisms

Salmonella enterica subsp. enterica serovar Heidelberg (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (359)
pride (102)
EGA (83)
MassIVE (39)
BioModels (23)
MetaboLights (17)
PAXDB (7)
GNPS (5)
PeptideAtlas (5)
ENA (3)
FAIRDOMHub (2)
PanoramaPublic (2)
dbGaP (1)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (11)
Brain (8)
Epithelial cell (7)
T cell (5)
Blood (4)
B cell (3)
Blood plasma (3)
Kidney (3)
Microglial cell (3)
Spleen (3)
Others (2)
Blood cell (2)
Bone marrow (2)
Cell suspension culture (2)
Extracellular vesicle (2)
Fibroblast (2)
Leukocyte (2)
Liver (2)
Lymph node (2)
Breast (1)
Colon (1)
Diploid cell (1)
Egg (1)
Embryonic kidney cell line (1)
Embryonic stem cell (1)
Extracellular matrix (1)
Fungal cell (1)
HEK-293 cell (1)
HeLa cell (1)
Heart (1)

Disease

Acute leukemia (5)
Neuroblastoma (2)
Brain cancer (2)
Breast cancer (2)
Alzheimer's disease (1)
Sham treated (1)
Perilesional skin (hair) (1)
Acute lymphoblastic leukemia (1)
Acute promyelocytic leukemia (1)
Wilms tumour (1)
Not Available (1)
Autism spectrum disorder (1)
Autosomal recessive polycystic kidney disease (1)
Brain meningioma (1)
Cardiovascular system disease (1)
Cell type cancer (1)
Cervical cancer (1)
Chronic myeloid leukemia (1)
Colon cancer (1)
Colorectal cancer (1)
Huntington Disease (1)
Inflammation (1)
Malignant neoplasm of ovary (1)
Meningioma (1)
Mental depression (1)
Pancreatic ductal adenocarcinoma (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)
Urinary bladder cancer (1)
Waldenstroem's macroglobulinemia (1)

Technology Type

Mass Spectrometry (102)
Shotgun proteomics (47)
Affinity purification coupled with mass spectrometry proteomics (32)
Gel-based experiment (20)
Bottom-up proteomics (18)
Mass spectrometry (13)
Data-dependent acquisition (9)
Illumina 15K (8)
Data-independent acquisition (5)
SWATH MS (5)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Codelink Human Whole Genome Bioarray (1)
ION_TORRENT, Ion Torrent Proton (1)
Illumina 450K (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (13)
Illumina HiSeq 2500 (9)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (9)
ScanArray 4000 [PerkinElmer] (4)
AB SOLiD 4 System (4)
Illumina HiSeq 2000 (4)
Illumina Genome Analyzer II (3)
NextSeq 500 (3)
Illumina Genome Analyzer (2)
Illumina MiSeq (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
Hamamatsu Nanozoomer S60 (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Illumina HiScanSQ (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
G2505A DNA microarray scanner [Agilent] (1)
418 [Affymetrix] (1)
Illumina HiSeq 1500 (1)
LTQ FT (1)
MaXis (1)
MicrOTOF II (1)
Orbitrap Astral (1)

Publication Date

2010 (68)
2015 (43)
2014 (36)
2011 (36)
2013 (34)
2020 (26)
2012 (26)
2005 (25)
2016 (25)
2022 (23)
2017 (23)
2025 (22)
2021 (22)
2009 (22)
2023 (20)
2008 (20)
2026 (17)
2024 (16)
2007 (16)
2018 (15)
2019 (10)
2006 (9)
2004 (2)

UNIPROT ID/AC

P31688 (15)
P32861 (15)
P33401 (15)
P37012 (15)
Q00764 (15)
O13525 (2)
P00044 (2)
P00045 (2)
P00127 (2)
P00128 (2)
P00163 (2)
P00175 (2)
P00330 (2)
P00331 (2)
P00358 (2)
P00359 (2)
P00360 (2)
P00401 (2)
P00410 (2)
P00420 (2)
P00424 (2)
P00425 (2)
P00427 (2)
P00431 (2)
P00498 (2)
P00549 (2)
P00560 (2)
P00572 (2)
P00635 (2)
P00724 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17754 (25)
CHEBI:16027 (25)
CHEBI:16761 (24)
CHEBI:15343 (21)
CHEBI:15361 (21)
CHEBI:16236 (21)
CHEBI:16551 (21)
CHEBI:30031 (21)
CHEBI:15422 (20)
CHEBI:15846 (20)
CHEBI:16001 (20)
CHEBI:16108 (20)
CHEBI:16908 (20)
CHEBI:17794 (20)
CHEBI:17835 (20)
CHEBI:18021 (20)
CHEBI:28602 (20)
CHEBI:4167 (20)
CHEBI:16084 (19)
CHEBI:17665 (19)
CHEBI:28013 (19)
CHEBI:29052 (19)
CHEBI:15978 (16)
CHEBI:16077 (14)
CHEBI:17659 (14)
CHEBI:18066 (14)
CHEBI:18283 (14)
CHEBI:30089 (14)
CHEBI:46398 (14)
CHEBI:28087 (8)

Metabolite Name

Cytidine (4)
Inosine (4)
Lysine (4)
Methionine (4)
Phenylalanine (4)
Proline (4)
Serine (4)
Tyrosine (4)
ADP (3)
AMP (3)
Adenosine (3)
Arachidonic acid (3)
Arginine (3)
Choline (3)
Citrulline (3)
Creatine (3)
Creatinine (3)
Fumaric acid (3)
Hypoxanthine (3)
L-Alanine (3)
L-Threonine (3)
Leucine (3)
Ornithine (3)
Pantothenic acid (3)
Phosphoric acid (3)
Succinic acid (3)
UMP (3)
Uracil (3)
Uric acid (3)
Valine (3)

First Public Date

2021 (1)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (21)

Lab affiliation

Georg-August University, Institute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms (2)
Georg-August-University Göttingen Department of Molecular Microbiology and Genetics Institute of Microbiology and Genetics (2)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (2)
Institute of Molecular Medicine and Cell Research University of Freiburg Stefan-Meier-Str. 17, D-79104 Freiburg, Germany (2)
Institute of Molecular Medicine and Cell Research, University Freiburg (2)
Prof. Dr. Oliver Schilling Heisenberg Professor of Translational Proteomics Institute of Surgical Pathology Faculty of Medicine University of Freiburg Breisacher Strasse 115a D-79106 Freiburg, Germany +49 761 27080610 oliver.schilling@mol-med.uni-freiburg.de (2)
University of Göttingen, Institute of Microbiology and Genetics, Department of Molecular Microbiology and Genetics (2)
-Harry Perkins Institute of Medical Research, Nedlands, Western Australia 6009, Australia -School of Pharmacy and Biomedical Sciences, Curtin University, Bentley, Western Australia 6102, Australia -Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
BioArCh, Department of Archaeology, University of York (1)
Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; Quantitative Biology Center (QBiC), University of Tübingen, Germany; Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
Breast Cancer Clinical Research Unit, CNIO, Spanish National Cancer Research Centre, Spain (1)
CRG/UPF (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, United Kingdom (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 (1)
Cellular & Molecular Metabolism Laboratory, Drug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University. (1)
Center for Medical Research, University of Linz, Austria (1)
Center for Translational Research, Children’s National Research Institute, Children’s National Hospital, Washington,DC, United States & Children’s Hospital of Philadelphia, Philadelphia, PA, United States (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Charite Ophthalmology / MDC Cellular Neuroscience (1)
Charité Universitätsmedizin – Chariteplatz 1, 10117 Berlin (1)
Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, Ciudad Universitaria, Ciudad de México 04510, Mexico; rgarc@bq.unam.mx (1)
Department of Biochemistry & Biophysics, Texas A&M University, College Station, Texas 77843 (1)
Department of Biology II and Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland (1)
Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Germany (1)
Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics, Grisebachstraße 8, 37077 Göttingen, Georg-August-Universität Göttingen (1)
Department of Neurology, Emory University, Atlanta, GA 30322, US (1)

IsPrivate

False (23)

Model Flag

Non Kinetic (2)

Classification

viruses (1)
bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (188)
RNA-seq of coding RNA (60)
ChIP-seq (22)
ChIP-chip by array (10)
Comparative genomic hybridization by array (10)
Other (9)
ChIP-chip by tiling array (8)
RNA-seq of non coding RNA (8)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by tiling array (6)
Methylation profiling by array (6)
Genotyping by array (5)
Unknown experiment type (4)
Animal - High-throughput sequencing (3)
Methylation profiling by high throughput sequencing (2)
CLIP-Seq (1)
Human - Single-cell sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
Trajectory (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (240)
2025 (211)
2023 (206)
2021 (202)
2024 (180)
2020 (137)
2019 (129)
2018 (113)
2016 (111)
2017 (110)
2015 (100)
2014 (94)
2010 (92)
2013 (74)
2012 (67)
2011 (64)
2026 (46)
2009 (38)
2008 (36)
2007 (23)
2005 (15)
2006 (10)
2004 (9)
2003 (4)
2002 (1)
2001 (1)
2000 (1)
1999 (1)

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Comparative genomic hybridization of Saccharomyces boulardii and Saccharomyces cerevisiae to determine genomic differences

A comparative genomic hybridisation experiment using Affymetrix YG-S98 arrays to study the genetic background of S. Boulardii compared to S. Cerevisiae strain BY4743. Background: Saccharomyces boulardii, a yeast that was isolated from fruit in Indochina has been used as a remedy for diarrhoea since ...

ORGANISM(S): Saccharomyces boulardii

2006-11-10 | E-MAXD-15 | biostudies-arrayexpress

Yeast carbon and nitrogen impulse transient data in chemostat

Wild type S. cerevisiae cells were grown under glucose or ammonium limitation in fully controlled aerobic chemostat cultures. At steady state, the limited nutrient was introduced into the growth medium in an impulse like manner to recover the medium to its non-limiting conditions. Samples were colle...

ORGANISM(S): Saccharomyces cerevisiae

2011-10-03 | E-MTAB-643 | biostudies-arrayexpress

New species and records of Metriocnemus van der Wulp s. str. from China (Diptera, Chironomidae).

Not available

S-EPMC3970060 | biostudies-literature

Network pharmacology of iridoid glycosides from Eucommia ulmoides Oliver against osteoporosis.

Not available

S-EPMC9076851 | biostudies-literature

Transcription profiling of mouse macrophages in response to infection with Streptococcus pyogenes

The complex response of murine macrophages to infection with Streptococcus pyogenes was investigated at the level of gene expression using a high-density oligomer microarray. More than 400 genes were identified as being differentially regulated. Many of the up-regulated genes encoded molecules were ...

ORGANISM(S): Mus musculus

2008-04-05 | E-GEOD-7769 | biostudies-arrayexpress

Neuropathy target esterase impairments cause Oliver-McFarlane and Laurence-Moon syndromes.

Not available

S-EPMC8108008 | biostudies-literature

A Sub-Micromolar MraY_AA Inhibitor with an Aminoribosyl Uridine Structure and a (S,S)-Tartaric Diamide: Synthesis, Biological Evaluation and Molecular Modeling.

Not available

S-EPMC8954382 | biostudies-literature

Cutaneous Features of Adams-Oliver Syndrome: Diagnosis, Differentiation, and Management.

Not available

S-EPMC12459420 | biostudies-literature

RBPJ mutations identified in two families affected by Adams-Oliver syndrome.

Not available

S-EPMC3415535 | biostudies-literature

Gene expression profiling of AOS Patient fibroblasts against Control fibroblasts

We described a striking divergence between the phenotypes arising from acute (siDOCK6) and chronic (DOCK6 KO cells) depletion is highly suggestive of a suppression mechanism that buffers the prolonged absence of DOCK6. This mechanism is probably also active in AOS patients who harbor homozygous loss...

ORGANISM(S): Homo sapiens

2016-09-29 | E-MTAB-5067 | biostudies-arrayexpress

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2607 Results

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