Omar M M - OmicsDI

Show results for

Unknown (1056)
Transcriptomics (49)
Proteomics (27)
Genomics (7)
Metabolomics (7)
Models (2)

Organisms

Homo sapiens (44)
Mus musculus (17)
Rattus norvegicus (3)
Legionella pneumophila (2)
Drosophila melanogaster (2)
West Nile virus (1)
Influenza A virus (A/Texas/36/1991(H1N1)) (1)
Aspergillus fumigatus (1)
Schistosoma mansoni (1)
Arabidopsis thaliana (1)
Escherichia coli (1)
Medicago truncatula (1)

Organisms

Mycobacterium tuberculosis (2)

Repository

biostudies-arrayexpress (51)
pride (16)
MassIVE (7)
MetaboLights (7)
EGA (3)
BioModels (2)
jPOST (2)
ENA (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (5)
Preadipocyte (2)
Subcutaneous adipose tissue (2)
Amygdala (1)
Blood cell (1)
Brain (1)
Fat cell (1)
Heart (1)
Hepatocyte (1)
Permanent cell line cell (1)
Regulation of adipose tissue development (1)
Synovia (1)
White adipose tissue (1)
White fat cell differentiation (1)

Disease

Oligodendroglioma (1)
Leukemia (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Hepatocellular carcinoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (6)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Bottom-up proteomics (3)
Data-independent acquisition (2)
Gel-based experiment (2)
SWATH MS (2)
Illumina Exome 250K (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Q Exactive (2)
ArrayWoRx Multi-Format Reader [Applied Precision] (1)
Other (1)
Axon- GenePix4000B (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
MaXis (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) (1)
Pagasus 4D GC-MS (LECO) (1)

Publication Date

2014 (10)
2015 (9)
2023 (8)
2024 (7)
2008 (7)
2016 (6)
2012 (5)
2022 (4)
2011 (4)
2010 (4)
2026 (4)
2021 (4)
2018 (3)
2007 (2)
2025 (2)
2020 (1)
2013 (1)
2009 (1)
2006 (1)
2017 (1)
2019 (1)

UNIPROT ID/AC

9823.ENSSSCP00000000410 (1)
9823.ENSSSCP00000000606 (1)
9823.ENSSSCP00000000717 (1)
9823.ENSSSCP00000001244 (1)
9823.ENSSSCP00000002108 (1)
9823.ENSSSCP00000003829 (1)
9823.ENSSSCP00000003865 (1)
9823.ENSSSCP00000005050 (1)
9823.ENSSSCP00000005769 (1)
9823.ENSSSCP00000007309 (1)
9823.ENSSSCP00000008216 (1)
9823.ENSSSCP00000009166 (1)
9823.ENSSSCP00000009441 (1)
9823.ENSSSCP00000009732 (1)
9823.ENSSSCP00000011053 (1)
9823.ENSSSCP00000011561 (1)
9823.ENSSSCP00000012903 (1)
9823.ENSSSCP00000013237 (1)
9823.ENSSSCP00000014399 (1)
9823.ENSSSCP00000015012 (1)
9823.ENSSSCP00000016046 (1)
9823.ENSSSCP00000016065 (1)
9823.ENSSSCP00000018879 (1)
9823.ENSSSCP00000019251 (1)
9823.ENSSSCP00000019299 (1)
9823.ENSSSCP00000019489 (1)
9823.ENSSSCP00000019502 (1)
9823.ENSSSCP00000019566 (1)
9823.ENSSSCP00000019793 (1)
9823.ENSSSCP00000020128 (1)

CHEBI ID

CHEBI:15603 (3)
CHEBI:17895 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15729 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16737 (2)
CHEBI:16857 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17148 (2)
CHEBI:17191 (2)
CHEBI:17203 (2)
CHEBI:17295 (2)
CHEBI:17351 (2)
CHEBI:17561 (2)
CHEBI:17750 (2)
CHEBI:17754 (2)
CHEBI:18019 (2)
CHEBI:18050 (2)
CHEBI:18257 (2)

Metabolite Name

Decanoic acid (2)
Glycerol (2)
Heptadecanoic acid (2)
Lactic acid (2)
Nonanoic acid (2)
Succinate (2)
Tetradecanoic acid (2)
(+)-15-nor-4-thujopsen-3-one (1)
(10S)-Juvenile hormone III diol (1)
(1R,2R)-3-oxo-2-(2'Z-pentenyl)-cyclopentanebutanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanebutanoic acid (1)
(2'S,5'R)-4-methyl-l-(5'-methyl-2',3',4',5'-tetrahydro[2' ',3' '-bifuran]-5'-yl)pentan-2-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(4R,7R)-4-Isopropenyl-7-methyl-2-oxo-oxepanone (1)
(5Z,7E)-9,10-seco-5,7,10(19)-cholestatriene (1)
(5Z,7E,22E,24E,26E)-(1S,3R)-26a,26b-dihomo-27-nor-9,10-seco-5,7,10(19),22,24,26(26a)-cholestahexaene-1,3,26b-triol (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Tetradecenoic acid (1)
(R)-1-Aminopropan-2-ol (1)
(R)-2-Hydroxyglutarate (1)
(R)-2-hydroxyglutarate (1)
(R)-3-Hydroxybutanoate (1)
(S)-Malate (1)
1,2,4-triazines (1)
1,3,5-trimethoxybenzene (1)
1,4-benzodiazepines (1)
1,6,6-Trimethyl-2,7-dioxabicyclo[3.2.2]nonan-3-one (1)
1-(9Z-hexadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Hexadecanol (1)
1-Hexylglycerol (1)

First Public Date

2015 (2)

Modelling Approach

Computational model (1)
Random forest procedure (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (2)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
Associate Professor, University of Toronto, Department of Medicine, Division of Rheumatology, Toronto Western Hospital, 1E 416, 399 Bathurst Street, Toronto, Ontario, Canada, M5T 2S8 (1)
Center for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, NC 28081 (1)
Centre for Proteome Research, Department of Biochemistry & Systems Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Department of Biology, University of Richmond, Richmond, VA (1)
Department of Physiology and Translational Biology and Engineering Program Temerty Faculty of Medicine University of Toronto (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Molecular Pharmacology Program, Memorial Sloan Kettering Cancer Center, New York, New York. (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (1)
University of Liverpool (1)
University of Nebraska Medical Center (1)
University of North Texas Department of Biological Sciences 1155 Union Circle #305220 Denton, TX 76203-5017 (1)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (32)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA (5)
ChIP-seq (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Other (1)

Release Date

2022 (156)
2025 (151)
2024 (145)
2021 (133)
2023 (124)
2020 (91)
2019 (51)
2018 (49)
2016 (37)
2015 (33)
2017 (33)
2014 (23)
2026 (19)
2012 (14)
2011 (12)
2013 (9)
2008 (9)
2010 (8)
2007 (5)
2009 (4)
2006 (1)

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Split-dose menthol-enhanced PEG vs PEG-ascorbic acid for colonoscopy preparation.

Not available

S-EPMC4323474 | biostudies-literature

A functional genomics approach identifies the GATA factor SERPENT as a tissue-specific partner of CLOCK/CYCLE in the Drosophila circadian clock

Broadly expressed transcriptions factors (TFs) control tissue-specific programs of gene expression through interactions with local TF networks. Prime examples are the circadian clock TFs CLOCK (CLK) and CYCLE (CYC or BMAL1): while they control a core transcriptional circuit throughout animal bodies,...

ORGANISM(S): Drosophila melanogaster

2013-06-01 | E-GEOD-40467 | biostudies-arrayexpress

Discovery of a new Cushings syndrome PKAc mutant that is retained within anchored type I holoenzymes

Raw MS data for proximity proteomics experiment in Omar M et. al. paper "Discovery of a new Cushings syndrome PKAc mutant that is retained within anchored type I holoenzymes."

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000092910 | MassIVE

Prostate cancer in multi-ethnic Asian men: Real-world experience in the Malaysia Prostate Cancer (M-CaP) Study.

Not available

S-EPMC8607241 | biostudies-literature

The effect of M. tuberculosis lineage on clinical phenotype.

Not available

S-EPMC10732390 | biostudies-literature

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features

Gene expression is determined by genomic elements called enhancers, which contain short motifs bound by different transcription factors (TFs). However, how enhancer sequences and TF motifs relate to enhancer activity is unknown and general sequence requirements for enhancers or comprehensive sets of...

ORGANISM(S): Drosophila melanogaster

2014-04-02 | E-GEOD-49809 | biostudies-arrayexpress

Transcriptional profile of M-NM-^TcalA and M-NM-^TcrzA Aspergillus fumigatus mutants during mammal infection

Aspergillus fumigatus mutant strains were collected from bronchoalveolar lavage fluids (BALFs) during acute mouse infection (4 and 12 hours). Transcriptional analysis were conducted by comparison of each mutant with the wild type strain (CEA17) in a dye swap experiment. Besides, we performed the tra...

ORGANISM(S): Aspergillus fumigatus

2012-12-02 | E-GEOD-27428 | biostudies-arrayexpress

Influence of Seasonality and Pollution on the Presence of Antibiotic Resistance Genes and Potentially Pathogenic Bacteria in a Tropical Urban River

Not available

S-EPMC12382643 | biostudies-literature

The Malay version of the attitudes and beliefs about cardiovascular disease (ABCD-M) risk questionnaire: a translation, reliability and validation study.

Not available

S-EPMC9310389 | biostudies-literature

Correction: The effect of M. tuberculosis lineage on clinical phenotype.

Not available

S-EPMC11343449 | biostudies-literature