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MetabolomicsEffects of coronatine elicitation on growth and metabolic profiles of Lemna paucicostata culture
In this study, the effects of coronatine treatment on the growth, comprehensive metabolic profiles, and productivity of bioactive compounds, including phenolics and phytosterols, in whole plant cultures of Lemna paucicostata were investigated using gas chromatography-mass spectrometry (GC-MS) couple...
2018-09-11 | MTBLS526 | MetaboLights
Proteomics2D-LC/MS/MS analysis of Escherichia coli under optimal growth condition
2D-LC/MS/MS analysis was used to examine the proteome of E. coli O157:H7 strain Sakai during exponential growth under optimal condition (i.e., from 35°C aw 0.993). MS/MS data obtained from each protein sample were processed by the Computational Proteomics Analysis System (CPAS), a web-based system ...
ORGANISM(S): Escherichia coli 
2019-12-04 | PXD000583 | Pride
Optimal growth condition Physiology 2d-lc/ms/ms E. coli 
MetabolomicsTime-resolved decoding of metabolic signatures of in vitro growth of the hemibiotrophic pathogen Colletotrichum sublineolum
Metabolomics has emerged as a powerful approach to comprehensively interrogate cellular biochemistry. As such, we applied an untargeted liquid chromatography-mass spectrometry metabolomic strategy to elucidate metabolome changes in the anthracnose-causing hemibiotrophic sorghum pathogen, Colletotric...
2022-05-30 | MTBLS735 | MetaboLights
MetabolomicsEcology-guided Bacillus SynCom from a rice–duckweed core reveals division of labor for concurrent growth promotion and sheath blight suppression

Ecologically derived synthetic communities can provide robust plant benefits, yet generalizable rules for assembling multifunctional consortia remain limited. We hypothesized that a “top-down” community assembled from an ecological core would yield complementary functions and resilience superior ...

2025-09-22 | MTBLS13022 | MetaboLights
ModelsLedzewicz2013 - On optimal chemotherapy with a strongly targeted agent for a model of tumor immune system interactions with generalized logistic growth
On optimal chemotherapy with a strongly targeted agent for a model of tumor-immune system interactions with generalized logistic growth. Ledzewicz U1, Olumoye O, Schättler H. 1 Dept. of Mathematics and Statistics, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026-1653, USA. ule...
2024-09-02 | BIOMD0000000919 | BioModels
Immuno-oncology 
MetabolomicsFrom Function to Omics: Endophytic Beauveria bassiana Promotes Maize Growth by Activating Phytohormone Signaling Pathways under Elevated Carbon Dioxide

Several entomopathogenic fungi (EPF) species can colonize and establish symbiotic relationships with plants as endophytes, which affects crop growth under elevated carbon dioxide (eCO₂) concentrations. However, how EPF facilitates plants under eCO2 is poorly understood, especially at the transcri...

2025-09-25 | MTBLS13043 | MetaboLights
TranscriptomicsTranscription profiling by tiling array of Arabidopsis thaliana leaf growth and development
Transcriptome changes during leaf growth and development were profiled. We extracted RNA from Arabidopsis leaf number six from plants growing in stable and controlled experimental conditions at four different growth stages both at the end-of-day (EOD) and end-of-night (EON). The experiment was perfo...
ORGANISM(S): Arabidopsis thaliana 
2012-12-12 | E-MTAB-1056 | biostudies-arrayexpress
MetabolomicsBeauveria bassiana acts as a beneficial endophyte in tea crops, modulating microbial communities and metabolic pathways to enhance plant growth

Entomopathogenic fungi have the ability to both directly kill insect pests and act as plant endophytic fungi to impact plant growth and development. Despite this, the widespread endophytic use of these fungi in tea plants (Camellia sinensis) is still limited. This study examined how Beauveria bas...

2025-12-15 | MTBLS12626 | MetaboLights
TranscriptomicsMicroarray Transcriptome Comparison Subzero Temperature and Optimal Temperature Growth in Psychrobacter arcticus 273-4
Permafrost soils are extreme environments that exert low-temperature, desiccation and starvation stress on bacteria over thousands to millions of years. To understand how Psychrobacter arcticus 273-4 survived for > 20,000 years in permafrost, transcriptome analysis was performed during growth at 22...
ORGANISM(S): Psychrobacter arcticus 273-4 
2010-05-15 | E-GEOD-12871 | biostudies-arrayexpress
TranscriptomicsRNA-seq transcriptome profiling of the psychrophilic phytoplankton Fragilariopsis cylindrus under environmentally relevant growth limitations
We performed RNA-sequencing experiments to examine the differential regulation of genes in the genome of the Southern Ocean diatom Fragilariopsis cylindrus including diverged alleles. RNA-seq was performed on three replicate samples for each experimental condition. Phytoplankton cells were grown und...
ORGANISM(S): Fragilariopsis cylindrus 
2016-12-16 | E-MTAB-5024 | biostudies-arrayexpress
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