Otto F F - OmicsDI

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Unknown (1577)
Proteomics (85)
Transcriptomics (42)
Genomics (9)
Metabolomics (6)
Models (2)
Other (2)

Organisms

Homo sapiens (50)
Mus musculus (20)
Staphylococcus aureus (6)
Clostridioides difficile 630 (4)
Caenorhabditis elegans (3)
Bacillus subtilis (2)
Bacteria (2)
Ensifer meliloti (2)
Enterobacter cloacae (2)
Rattus norvegicus (2)
cellular organisms (1)
Eimeria tenella (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Pachycara brachycephalum (1)
Plasmodium falciparum 3D7 (1)
Bos taurus (1)
Plasmodium falciparum (1)
Plasmodium falciparum 7G8 (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Streptococcus pneumoniae D39 (1)
126790 (1)
Actinoplanes sp. SE50/110 (1)
Archaea (1)
Bacillus licheniformis DSM 13 = ATCC 14580 (1)
Bacillus pumilus (1)
Bacillus subtilis subsp. subtilis (1)
Bathymodiolus azoricus (1)
Escherichia phage Lambda (1)
Haloferax volcanii (1)

Repository

pride (82)
biostudies-arrayexpress (44)
EGA (7)
MetaboLights (6)
MassIVE (3)
BioModels (2)
GPMDB (2)

Tissue

Cell culture (10)
Skeletal muscle (4)
B cell (2)
Blood (2)
Brain (2)
Fibroblast (2)
Heart (2)
Macrophage (2)
Neuron (2)
Neutrophil (2)
Skin (2)
Bile (1)
Blood cell (1)
Cardiocyte differentiation (1)
Cerebrospinal fluid (1)
Dendritic cell (1)
Embryonic fibroblast (1)
Epithelial cell (1)
Epithelial melanocyte (1)
Fetal cardiomyocyte (1)
Fibroblast of lung (1)
Foot muscle (1)
Gill (1)
H9c2 cell (1)
Kidney (1)
Liver (1)
Monocyte (1)
Permanent cell line cell (1)
Plant cell (1)
T cell (1)

Disease

Amyotrophic lateral sclerosis (3)
Not Available (2)
Cardiovascular system disease (2)
Marinesco-Sjogren syndrome (2)
Brain cancer (1)
Disease free (1)
Frontotemporal dementia (1)
Gray platelet syndrome (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency (1)
Myotonic dystrophy type 1 (1)
Neuromuscular junction disease (1)
Parkinson's disease (1)
Stroke (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (82)
Shotgun proteomics (56)
Bottom-up proteomics (8)
Gel-based experiment (7)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Data-independent acquisition (2)
SRM/MRM (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
NextSeq 500 (3)
Illumina HiSeq 4000 (2)
Instrument (2)
Q Exactive (2)
Flow injection analysis MS - negative (2)
FACSAria III (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
LTQ Velos (1)
Flow injection analysis MS - positive (1)

Publication Date

2022 (18)
2021 (13)
2012 (12)
2018 (12)
2016 (10)
2024 (8)
2017 (8)
2020 (8)
2011 (7)
2025 (7)
2019 (6)
2014 (5)
2010 (5)
2015 (4)
2008 (4)
2026 (4)
2013 (1)
2009 (1)
2023 (1)

UNIPROT ID/AC

O15111 (1)
O15519 (1)
P01375 (1)
P09874 (1)
P19438 (1)
P19838 (1)
P21580 (1)
P25963 (1)
P42574 (1)
P55212 (1)
P98170 (1)
Q12933 (1)
Q13158 (1)
Q13546 (1)
Q14790 (1)
Q15628 (1)
Q9NZS9 (1)

ENSEMBL ID

ENST00000216797 (1)
ENST00000237289 (1)
ENST00000309955 (1)
ENST00000371199 (1)

CHEBI ID

CHEBI:64433 (3)
CHEBI:64516 (3)
CHEBI:64517 (3)
CHEBI:66848 (3)
CHEBI:66849 (3)
CHEBI:136220 (2)
CHEBI:137329 (2)
CHEBI:140360 (2)
CHEBI:15428 (2)
CHEBI:15843 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:16610 (2)
CHEBI:16737 (2)
CHEBI:16811 (2)
CHEBI:17126 (2)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:18257 (2)
CHEBI:19138 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)

Metabolite Name

AMP (2)
Carnosine (2)
Creatinine (2)
Histamine (2)
Taurine (2)
(+)-(1R,2R)-1,2-Diphenylethane-1,2-diol (1)
(+/-)-6-Acetonyldihydrochelerythrine (1)
(-)-Nopol (1)
(-)-trans-Carveol (1)
(10S,11S)-Pterosin C (1)
(1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate (1)
(2-hydroxy-2-{9-hydroxy-7-oxo-2H,3H,7H-furo[3,2-g]chromen-2-yl}propoxy)sulf... (1)
(22Alpha)-hydroxy-campest-4-en-3-one (1)
(3''x,5''a,9''x,10''b)-O-(3-Hydroxy-6-oxo-7-drimen-11-yl)umbelliferone (1)
(3R,7R)-1,3,7-Octanetriol (1)
(3S,5R,6S,7E,9x)-7-Megastigmene-3,6,9-triol 9-glucoside (1)
(3S,7E,9R)-4,7-Megastigmadiene-3,9-diol 9-[apiosyl-(1->6)-glucoside] (1)
(3Z,6Z)-3,6-Nonadien-1-ol (1)
(3beta,22E)-26,27-Dinorergosta-5,22-dien-3-ol (1)
(4-{3-[2,4-dihydroxy-5-(3-methylbut-2-en-1-yl)phenyl]-2-hydroxy-3-oxopropyl... (1)
(5-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran... (1)
(7''R,8''R)-4,7''-Epoxy-3''-methoxy-4'',5,9,9''-lignanetetrol 9''-glucoside (1)
(8E,15E)-1,8,15-Heptadecatriene-11,13-diyne (1)
(9Z,11E,13E,15Z)-4-Oxo-9,11,13,15-octadecatetraenoic acid (1)
(Ac)2-L-Lys-D-Ala (1)
(Iso)Citrate (1)
(Iso)Leucine (1)
(N(1) + N(8))-acetylspermidine (1)
(R)-1,3-Octanediol (1)
(R)-2-Benzylsuccinate (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

15.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (6)
Methylation profiling by array (4)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA from single cells (2)
Trajectory (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (182)
2023 (179)
2022 (178)
2025 (169)
2024 (128)
2020 (126)
2019 (110)
2018 (96)
2017 (77)
2016 (77)
2015 (51)
2012 (42)
2014 (39)
2013 (32)
2011 (29)
2026 (25)
2010 (23)
2008 (16)
2009 (11)
2006 (7)
2007 (5)
2002 (5)
2005 (3)
2003 (3)
2001 (3)
2004 (2)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (2)
Department of Neurology, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 4205920 fax: +49 3834 4205902 (2)
ETH Zürich Institute of Molecular Systems Biology Otto-Stern-Weg 3 8093 Zürich Switzerland (2)
Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 864073 fax: +49 3834 864202 (2)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (2)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (2)
1. Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227 Dortmund 2. Department for Systems Chronobiology, Institute of Medical Psychology, LMU Munich, Goethe-Str. 31, 80336 Munich (1)
4Cellular Proteome Research, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Bioprocess Engineering, Otto von Guericke University Magdeburg, Magdeburg, Germany Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering, Magdeburg, Germany. (1)
Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany (1)
CNIO (1)
Center for Protein Assemblies and Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer Strasse 8, 85747 Garching, Germany (1)
Center for Protein Assemblies and Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer Strasse 8, 85748 Garching, Germany (1)
Center for Protein Assemblies, Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer-Straße 8, 85747 Garching, Germany (1)
Centre of Molecular and Environmental Biology, University of Minho (Portugal) (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Otto Stern Weg 3, 8093, Zürich, Switzerland (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland. Faculty of Science, University of Zürich, Zürich, Switzerland (1)
Department of Biology,Watson Building 207, MS #52, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, UK. (1)
Department of Mechanistic Cell Biology, Max-Planck Institute of Molecular Physiology, 9 Otto-Hahn-Str. 11, 44227 Dortmund, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, D-17489 Greifswald, Germany (1)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald (1)
Dr. rer. nat. Dirk Benndorf, Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany (1)
German Center for Neurodegenerative Diseases (DZNE) Feodor-Lynen-Str. 17 81377 München Germany (1)
Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA (1)
Hochschule Anhalt Fachbereich 7 - Angewandte Biowissenschaften und Prozesstechnik (BWP) Bernburger Straße 55 06366 Köthen Germany (1)

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Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.

Not available

S-EPMC9300711 | biostudies-literature

A novel mobile genomic island: introducing ‘cephalosporinase morons’ in Enterobacteriaceae

The exchange of mobile genomic islands (MGIs) between microorganisms is often mediated by phages. As a consequence, not only phage genes are transferred, but also genes that have no particular function in the phage's lysogenic cycle. If they provide benefits to the phage's host, such genes are refer...

ORGANISM(S): Enterobacter cloacae

2018-08-21 | PXD007113 | Pride

"cephalosporin resistance " Enterobacteriaceae "mobile genomic islands "

Label-free shotgun proteomics of S. cerevisiae producing starch-like glucans

The synthesis of starch-like glucans can be reconstituted in S. cerevisiae using the genes from Arabidopsis thaliana: heterologous expression of SS1 to SS4, BE2, BE3, ISA1, and ISA2, together with a bacterial ADPglucose pyrophosphorylase gene for substrate provision in yeast strain 29, yielded insol...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-09-05 | PXD032241 | Pride

Lc-ms/ms Progenesisqi Yeast

Effects of vibrational excitation on the F + H2O → HF + OH reaction: dissociative photodetachment of overtone-excited [F-H-OH].

Not available

S-EPMC5674243 | biostudies-literature

Proteome Analysis of Actinoplanes sp. SE50/110

The acarviose metabolite acarbose is an a glucosidase inhibitor produced by Actinoplanes sp. SE50/110. It is medically important because it is used in the treatment of type 2 diabetes. In this work a comprehensive proteome analysis of Actinoplanes sp. SE50/110 was carried out. The associated txt and...

ORGANISM(S): Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)

2015-10-21 | PXD001497 | Pride

Actinoplanes sp. se50/110

2'-Deoxy-2'-fluoro-beta-D-arabinonucleosides and oligonucleotides (2'F-ANA): synthesis and physicochemical studies.

Not available

S-EPMC110742 | biostudies-literature

The response of B. pumilus cells to glucose starvation

In this study the proteome of soluble intracellular and extracellular samples have been analysed of the gram positive BAcillus pumilus.

ORGANISM(S): Bacillus pumilus

2018-07-05 | PXD005602 | Pride

Keywords bacillus pumilus/ glucose starvation/ proteome

The kinetochore proteins CENP-E and CENP-F directly and specifically interact with distinct BUB mitotic checkpoint Ser/Thr kinases.