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ProteomicsProteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify virusesProteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify viruses
Humans can be infected by a wide variety of virus species. To detect these different viruses, a data analysis approach for shotgun proteomic data was developed. For this proteome for pandemic preparedness (P4PP) pipeline, a database (P4PPv01) and a web application (P4PP) were constructed. The P4PP p...
ORGANISM(S): West Nile virus H1N1 subtype Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5) Influenza A virus H3N2 Rhinovirus A Modified Vaccinia Ankara virus Human orthorubulavirus 4 Severe acute respiratory syndrome coronavirus 2 Influenza B virus Measles virus genotype B3 Human parechovirus 3 
2025-05-27 | PXD054958 | Pride
Identification Cell culture Virus Lc-ms/ms 
ProteomicsThe expression of virulence and antimicrobial related proteins in different Burkholderia mallei and Burkholderia pseudomallei isolates
Burkholderia mallei and Burkholderia pseudomallei are both potential biological threats agents. Melioidosis caused by B. pseudomallei is endemic in Southeast Asia and Northern Australia, while glanders caused by B. mallei infections are rare. Here we studied the proteomes of different B. mallei and ...
ORGANISM(S): Burkholderia mallei Burkholderia pseudomallei 
2022-12-15 | PXD028126 | Pride
Burkholderia mallei burkholderia pseudomallei proteome lc-ms/ms colony 
ProteomicsProteome2virus: Shotgun mass spectrometry data analysis pipeline for virus identification
To increase the number of virus species that can be detected we developed a shotgun proteomics based approach, which was applied to viral samples, after which the identified peptides were searched for in a database equipped with proteomic data of 46 viruses, known to be infectious to humans, using a...
ORGANISM(S): Homo sapiens (Human) Cercopithecus aethiops (Green monkey) (Grivet) Macaca mulatta (Rhesus macaque) 
2023-06-16 | PXD036663 | Pride
Diagnsoe Proteomics Identification Virus Proteome2virus Mass spectrometry 
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