Pan An A - OmicsDI

Show results for

Unknown (22865)
Transcriptomics (2404)
Genomics (1466)
Proteomics (1120)
Metabolomics (464)
Other (44)
Methylation profiling (22)
Models (19)
Multiomics (5)
Genomic (5)
Clinical (4)

Organisms

Homo sapiens (2014)
Mus musculus (922)
Drosophila melanogaster (98)
Pan troglodytes (83)
Rattus norvegicus (57)
Saccharomyces cerevisiae (47)
Arabidopsis thaliana (45)
Danio rerio (39)
Macaca mulatta (38)
Gallus gallus (25)
Escherichia coli (23)
Caenorhabditis elegans (21)
Oryza sativa (20)
Methanococcus maripaludis S2 (17)
Sus scrofa (16)
Bos taurus (16)
Schizosaccharomyces pombe (15)
Streptomyces coelicolor (14)
Halobacterium salinarum (12)
Zea mays (12)
cellular organisms (10)
Hordeum vulgare (8)
Brassica napus (7)
Escherichia coli str. K-12 substr. MG1655 (7)
Mycobacterium tuberculosis (7)
Dehalococcoides (1)
Hepatitis B virus (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter thermautotrophicus str. Delta H (1)

Organisms

Homo sapiens (305)
Mus musculus (166)
Drosophila melanogaster (15)
Caenorhabditis elegans (10)
Pan troglodytes (8)
Halobacterium salinarum NRC-1 (8)
Danio rerio (5)
Thermococcus kodakarensis (4)
Oncorhynchus mykiss (3)
Acinetobacter baumannii (3)
Arabidopsis thaliana (3)
Escherichia coli (3)
Rattus norvegicus (3)
Pyrococcus furiosus (2)
Aggregatibacter actinomycetemcomitans (2)
Saccharolobus islandicus REY15A (2)
Brucella melitensis (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Legionella pneumophila (2)
Viruses (2)
Salmonella enterica (2)
Xenopus laevis (2)
Saccharomyces cerevisiae (2)
Ralstonia solanacearum (2)
Salmonella enterica subsp. enterica serovar Agona str. 01.O.05 (1)
Waddlia chondrophila (1)
Oryza alta (1)
Thermoplasma acidophilum (1)
Planococcus halocryophilus (1)
Pan paniscus (1)

Repository

biostudies-arrayexpress (2393)
ENA (918)
pride (741)
geo (502)
MetaboLights (462)
iProX (141)
MassIVE (92)
EGA (91)
jPOST (74)
PeptideAtlas (31)
EVA (30)
PAXDB (28)
BioModels (14)
PanoramaPublic (13)
dbGaP (5)
LINCS (4)
FAIRDOMHub (3)
Cell Collective (2)
GNPS (2)
NODE (1)

Tissue

Cell culture (192)
Epithelial cell (58)
Brain (41)
B cell (40)
Liver (34)
Blood (31)
Lung (28)
Blood plasma (22)
T cell (21)
Kidney (20)
Permanent cell line cell (18)
Heart (17)
Colon (16)
Leaf (15)
Skin (15)
Cell suspension culture (14)
Fibroblast (13)
Macrophage (13)
Monocyte (13)
Whole body (13)
Hepatocyte (11)
Plant cell (11)
Primary cell (11)
Bone marrow (9)
Blood cell (8)
Peripheral blood mononuclear cell (8)
Spleen (8)
Blood serum (7)
Breast (2)
Prefrontal Cortex (1)

Disease

Colon cancer (22)
Breast cancer (19)
Disease free (16)
Brain cancer (13)
Lymphoma (13)
Acute leukemia (12)
Influenza (9)
Alzheimer's disease (8)
Cardiovascular system disease (7)
Melanoma (7)
Cervix carcinoma (6)
Chagas disease (6)
Lung cancer (6)
Normal (5)
Avian influenza (4)
COVID-19 (4)
Chronic lymphocytic leukemia (4)
Lung adenocarcinoma (4)
Malignant neoplasm of ovary (4)
Non-small cell lung carcinoma (4)
Colorectal Neoplasms (2)
Colon cancer Dukes C (1)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
N/A (culture-derived) (1)
Renal cancer (1)
Hepatitis C infected (1)
None (1)
Esophageal carcinoma (1)
Metastatic colorectal cancer (1)
Breast Carcinoma (1)

Technology Type

Mass Spectrometry (741)
Shotgun proteomics (352)
Mass spectrometry (244)
Mass spectrometry assay (212)
Bottom-up proteomics (150)
Affinity purification coupled with mass spectrometry proteomics (129)
Data-dependent acquisition (84)
SWATH MS (49)
Gel-based experiment (40)
Data-independent acquisition (30)
Immunopeptidomics (16)
Top-down proteomics (15)
SRM/MRM (14)
NMR spectroscopy (10)
All-ion fragmentation (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Proteogenomics (6)
MSE (4)
Affinity proteomics (3)
DiaPASEF (3)
Illumina HiSeq 2000 (2)
ATAC-seq (2)
DNA sequencing (2)
GCP (2)
Mass spectrometry (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
OXFORD_NANOPORE, MinION (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (430)
Illumina NovaSeq X (114)
NextSeq 500 (106)
NextSeq 2000 (72)
Illumina HiSeq 2500 (67)
Illumina HiSeq 2000 (58)
NextSeq 550 (56)
Illumina HiSeq 4000 (53)
Illumina MiSeq (25)
DNBSEQ-G400 (22)
NA (18)
N/A (16)
Element AVITI (14)
BGISEQ-500 (9)
PromethION (8)
Maxwell RSC Instrument (7)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (7)
NextSeq 1000 (7)
DNBSEQ-T7 (7)
Illumina HiSeq 1500 (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
Chromium 10x (6)
None (6)
None (6)
Illumina HiSeq X (6)
HiSeq X Ten (6)
Illumina HiSeq 3000 (6)
See manuscript (5)
10x Genomics Chromium (5)
Illumina Genome Analyzer IIx (5)

Publication Date

2026 (856)
2025 (772)
2023 (274)
2024 (266)
2021 (220)
2010 (218)
2022 (215)
2013 (201)
2014 (198)
2011 (187)
2015 (174)
2012 (173)
2016 (167)
2020 (146)
2019 (146)
2018 (82)
2008 (69)
2009 (53)
2017 (48)
2006 (20)
2007 (19)
2005 (11)
2004 (4)
2027 (1)

UNIPROT ID/AC

1433B_HUMAN (12)
1433E_HUMAN (12)
1433F_HUMAN (12)
1433G_HUMAN (12)
1433S_HUMAN (12)
1433T_HUMAN (12)
1433Z_HUMAN (12)
2AAA_HUMAN (12)
3HIDH_HUMAN (12)
4F2_HUMAN (12)
5NTD_HUMAN (12)
9606.ENSP00000291295 (12)
9606.ENSP00000330842 (12)
9606.ENSP00000347168 (12)
9606.ENSP00000348924 (12)
9606.ENSP00000349467 (12)
9606.ENSP00000352119 (12)
9606.ENSP00000352627 (12)
9606.ENSP00000355778 (12)
9606.ENSP00000358154 (12)
9606.ENSP00000358160 (12)
9606.ENSP00000364802 (12)
9606.ENSP00000366679 (12)
9606.ENSP00000366956 (12)
9606.ENSP00000366962 (12)
9606.ENSP00000366974 (12)
9606.ENSP00000366999 (12)
9606.ENSP00000367034 (12)
9606.ENSP00000382982 (12)
P10276 (1)

ENSEMBL ID

ENSPTRG00000000012.3 (1)
ENSPTRG00000000038.4 (1)
ENSPTRG00000000051.4 (1)
ENSPTRG00000000052.3 (1)
ENSPTRG00000000109.3 (1)
ENSPTRG00000000124.3 (1)
ENSPTRG00000000138.3 (1)
ENSPTRG00000000153.3 (1)
ENSPTRG00000000158.5 (1)
ENSPTRG00000000197.5 (1)
ENSPTRG00000000202.3 (1)
ENSPTRG00000000217.5 (1)
ENSPTRG00000000242.4 (1)
ENSPTRG00000000255.5 (1)
ENSPTRG00000000263.4 (1)
ENSPTRG00000000264.2 (1)
ENSPTRG00000000265.2 (1)
ENSPTRG00000000276.1 (1)
ENSPTRG00000000277.2 (1)
ENSPTRG00000000278.3 (1)
ENSPTRG00000000279.3 (1)
ENSPTRG00000000280.2 (1)
ENSPTRG00000000290.3 (1)
ENSPTRG00000000302.3 (1)
ENSPTRG00000000338.4 (1)
ENSPTRG00000000339.4 (1)
ENSPTRG00000000340.3 (1)
ENSPTRG00000000363.4 (1)
ENSPTRG00000000370.5 (1)
ENSPTRG00000000371.4 (1)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10066 (3)
CHEBI:10067 (3)
CHEBI:10246 (3)
CHEBI:10261 (3)
CHEBI:10489 (3)
CHEBI:10491 (3)
CHEBI:10492 (3)
CHEBI:10493 (3)
CHEBI:10494 (3)
CHEBI:10495 (3)
CHEBI:10497 (3)
CHEBI:10499 (3)
CHEBI:10500 (3)
CHEBI:10529 (3)
CHEBI:10530 (3)
CHEBI:10531 (3)
CHEBI:10532 (3)
CHEBI:10533 (3)
CHEBI:10745 (3)
CHEBI:10866 (3)
CHEBI:10888 (3)
CHEBI:10925 (3)
CHEBI:10966 (3)
CHEBI:10986 (3)
CHEBI:11033 (3)
CHEBI:11063 (3)
CHEBI:11186 (3)
CHEBI:11192 (3)
CHEBI:11195 (3)

Metabolite Name

Hypoxanthine (103)
Creatine (98)
Uridine (95)
Adenosine (93)
Adenine (90)
Choline (90)
Guanosine (89)
Uracil (86)
Inosine (83)
Taurine (83)
Guanine (79)
Xanthine (77)
Creatinine (74)
Betaine (73)
Cytidine (73)
Cytosine (72)
L-Phenylalanine (72)
L-Tyrosine (72)
Azelaic acid (71)
L-Histidine (71)
L-Tryptophan (69)
Oleamide (68)
Indole (67)
Riboflavin (66)
Xanthosine (65)
Thymidine (64)
Thymine (64)
Pantothenic acid (62)
Citric acid (61)
Ornithine (61)

First Public Date

2025 (158)
2024 (111)
2026 (99)
2023 (94)
2013 (89)
2014 (63)
2022 (62)
2021 (60)
2020 (60)
2019 (41)
2018 (33)
2017 (20)
2016 (16)
2015 (11)
2011 (1)

Modelling Approach

Constraint-based model (6)
Machine learning (3)
Ordinary differential equation model (2)

Study status

Completed (3)
Recruiting (1)

Lab affiliation

Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA (9)
Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
University of Oxford (5)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (4)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (4)
Icahn School of Medicine at Mount Sinai (4)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (4)
University of Tübingen Interfaculty Institute for Cell Biology Department of Immunology Auf der Morgenstelle 15 72076 Tuebingen Germany (4)
Zhejiang University (4)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (3)
ETHZ IMSB (3)
Institute for Systems Biology, Seattle, WA, USA (3)
Massachusetts Institute of Technology (3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany (3)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (3)
Shanghai Institute of Materia Medica (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
The University of Sydney (3)
(1) Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium; (2) VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium. (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (2)
Cell Biology, Faculty of Science, Utrecht University, TheNetherlands (2)
Center of experimental therapeutics Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Centre de recherche Agora Rue du Bugnon 25A CH-1005 Lausanne (2)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (2)
Department of Biochemistry and Molecular Biology and Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton 3800, VIC, Australia (2)
Department of Biological Chemistry, University of California Los Angeles, Los Angeles, California (2)

Keyword

Bidirectional endoscopy (1)
Fecal immunochemical test (1)
Fluorouracil (1)
Guaiac fecal occult blood test (1)
Helicobacter pylori stool antigen test (1)
Irinotecan (1)
Leucovorin (1)
Levoleucovorin (1)
Liver cancer (1)
MFOLFOXIRI + Panitumumab (1)
Mass screening (1)
Oxaliplatin (1)
Panitumumab (1)
RAS and BRAF wt (1)
Squamous cell carcinoma of the head and neck (1)
Stomach cancer (1)
Vectibix (1)

IsPrivate

False (14)

Model Flag

Non Kinetic (3)

Submitter Keywords

FROG (4)
Ersilia (3)
FAIR-AIML (3)
Machine Learning Model (3)

Classification

bacteria (104)
viruses (4)
fungi (3)
protozoa (1)

Modification

2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
Not available (3)
N6 (2)
+3amu) (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (664)
RNA-seq of coding RNA (632)
ChIP-seq (269)
RNA-seq of coding RNA from single cells (156)
RNA-seq of total RNA (84)
ChIP-chip by tiling array (56)
Methylation profiling by array (49)
Other (48)
Unknown experiment type (46)
DNA-seq (42)
Methylation profiling by high throughput sequencing (40)
Comparative genomic hybridization by array (38)
Transcription profiling by tiling array (25)
ATAC-seq (21)
Single nucleus RNA sequencing (21)
Genotyping by high throughput sequencing (21)
RNA-seq of non coding RNA (18)
CUT&RUN (17)
ChIP-chip by array (16)
Spatial transcriptomics by high-throughput sequencing (15)
Genotyping by array (12)
ScATAC-seq (10)
Cell line - High-throughput sequencing (9)
Hi-C (9)
Animal - High-throughput sequencing (8)
Transcription profiling by RT-PCR (8)
Bisulfite-seq (8)
RIP-seq (8)
Ribo-seq (5)
CLIP-seq (4)

Release Date

2025 (3307)
2022 (3209)
2023 (2842)
2024 (2662)
2021 (2518)
2020 (1803)
2019 (1350)
2018 (1164)
2017 (944)
2026 (909)
2016 (808)
2015 (803)
2014 (723)
2013 (492)
2012 (427)
2010 (369)
2011 (350)
2009 (176)
2008 (151)
2007 (73)
2006 (52)
2005 (41)
2004 (17)
2003 (14)
2002 (12)
2000 (12)
2001 (11)
1999 (7)
1998 (5)
1997 (2)

Location

China (1)
Germany (1)
Italy (1)
Taiwan (1)

Previous page
1 / 2842
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2842
Next page

Sort by:

Relevance

Page size

Metabolomics dataset of PPAR-pan treated rat liver (eicosanoid assay)

This article contains mass spectrometry (MS) data investigating small molecule changes as an effect of a triple peroxisome proliferator-activated receptor (PPAR-pan) agonist GW625019 in the liver as described in the manuscript “PPAR-pan Activation Induces Hepatic Oxidative Stress and Lipidomic Re...

2016-05-13 | MTBLS278 | MetaboLights

Metabolomics dataset of PPAR-pan treated rat liver (acyl-carnitine and aqueous metabolite assays)

2016-05-13 | MTBLS303 | MetaboLights

Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes

Full title: Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes: Implications for its niche adaptation, pathogenesis, and evolution Listeria monocytogenes is a foodborne bacterial pathogen well known for adaptability to diverse environmental and host niches, and a high f...

ORGANISM(S): Listeria monocytogenes EGD-e

2010-04-06 | E-GEOD-20367 | biostudies-arrayexpress

The International Cancer Genome project: Pan-Cancer Analysis of Whole Genomes (PCAWG)

The Pan-Cancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in more than 2,800 cancer whole genomes from the International Cancer Genome Consortium. Building upon previous work which examined cancer coding regions, this project is ...

ORGANISM(S): Homo sapiens

2020-02-05 | E-MTAB-5200 | biostudies-arrayexpress

The International Cancer Genome project: Pan-Cancer Analysis of Whole Genomes (PCAWG)- Alternative view by individual

ORGANISM(S): Homo sapiens

2020-02-05 | E-MTAB-5423 | biostudies-arrayexpress

The pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii

The human gut microbiota harbors methanogens represented by the dominant archaeon, Methanobrevibacter smithii, a polyphyletic group of acetogens, and sulfate-reducing bacteria. Defining their roles in the H2-economy of the gut has potential therapeutic importance for modulating the efficiency of fe...

ORGANISM(S): Methanobrevibacter smithii

2011-03-30 | E-GEOD-25408 | biostudies-arrayexpress

Gene expression changes induced by the pan-PIM inhibitor ETP-39010 in 4 peripheral T cell lymphoma cell lines

Peripheral T cell lymphoma (PTCL) is a very aggressive disease which currently lacks efficient targeted therapy. New therapeutic strategies are needed to improve the very poor outcome of these patients. In these study we hypothesized that PIM kinases could be of therapeutic value in PTCL because we ...

ORGANISM(S): Homo sapiens

2014-11-14 | E-GEOD-42595 | biostudies-arrayexpress

Urinary Ubiquitin-Specific Protease 2 (USP2) as a Diagnostic Biomarker for Chronic Kidney Disease: An Integrated Multi-Omics and Network Analysis

Urinary USP2 is elevated in chronic kidney disease and shows strong diagnostic performance. Integrated metabolomics and proteomics analyses identified cortisol and prostaglandin A3 as candidate mediators and linked USP2 to lipid metabolism and ferroptosis-related pathways.

2026-05-05 | MTBLS14426 | MetaboLights

An Atlas of Ferroptosis-induced Secretomes promotes Macrophage priming

Cells undergoing regulated necrosis systemically communicate with the immune system via release of protein and non-protein secretomes. Ferroptosis is a recently described iron-dependent type of regulated necrosis driven by massive lipid peroxidation. While membrane rupture occurs during ferroptosis,...

2025-03-04 | MTBLS9798 | MetaboLights

Methanobrevibacter smithii expression profiling

This SuperSeries is composed of the following subset Series: GSE25408: The pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii GSE25535: Expression data from an in vitro growth of Methanobrevibacter smithii PS Refer to individual Series

ORGANISM(S): Methanobrevibacter smithii ATCC 35061

2011-11-07 | E-GEOD-25537 | biostudies-arrayexpress

Previous page
1 / 2842
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2842
Next page

Sort by:

Relevance

Page size

28414 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets