Pan Sun S - OmicsDI

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Unknown (2767)
Proteomics (82)
Transcriptomics (28)
Metabolomics (27)
Genomics (15)

Organisms

Homo sapiens (67)
Mus musculus (28)
Streptococcus pneumoniae D39 (3)
Saccharomyces cerevisiae SK1 (2)
Aggregatibacter actinomycetemcomitans (2)
Tardigrada (2)
Chlorocebus sabaeus (2)
Thermoplasma acidophilum DSM 1728 (1)
Flaveria bidentis (1)
Bacillus anthracis str. Sterne (1)
Haemophilus influenzae (1)
Yersinia pseudotuberculosis (1)
Sorghum bicolor (1)
Vitis vinifera (1)
Escherichia coli (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Candida albicans (1)
Gallus gallus (1)
Human alphaherpesvirus 1 (1)
Saccharomyces cerevisiae (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Spinacia oleracea (1)
Aspergillus flavus NRRL3357 (1)
Citrus maxima (1)
Dengue virus (1)
Neurospora crassa (1)
Oryza sativa (1)

Repository

biostudies-arrayexpress (41)
pride (40)
iProX (37)
MetaboLights (27)
MassIVE (3)
EGA (2)
jPOST (2)

Tissue

Cell culture (16)
Liver (6)
Hepatocyte (4)
Epithelial cell (2)
Fibroblast (2)
Kidney cell (2)
Kidney cell line (2)
B-cell lymphoma cell (1)
Brain (1)
CARO_0000000 (1)
Colon (1)
Early embryonic cell (1)
Flower bud (1)
Heart (1)
Lung squamous cell carcinoma cell (1)
Lymph node (1)
Mycelium (1)
Permanent cell line cell (1)
Plant cell (1)
Sciatic nerve (1)
Spinal column (1)
Stem cell (1)
Whole body (1)

Disease

Kidney cancer (3)
Colon cancer (2)
Acute leukemia (1)
Breast cancer (1)
Cardiovascular system disease (1)
Hepatocellular carcinoma (1)
Influenza (1)
Liver cancer (1)
Lymphoma (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (16)
Mass spectrometry (14)
Mass spectrometry assay (13)
Bottom-up proteomics (8)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
MSE (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (10)
Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse-phase (8)
Liquid Chromatography MS - positive - reverse-phase (8)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - hilic (3)
Illumina NovaSeq X (2)
Q Exactive (2)
Gas Chromatography MS - (2)
MA900, Sony (1)
10x Chromium Controller (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
TripleTOF 5600 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2026 (21)
2025 (20)
2023 (13)
2022 (12)
2021 (12)
2024 (10)
2013 (9)
2020 (6)
2015 (5)
2014 (5)
2011 (5)
2018 (5)
2010 (4)
2019 (4)
2008 (2)
2016 (1)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:16196 (5)
CHEBI:16411 (5)
CHEBI:16467 (5)
CHEBI:16919 (5)
CHEBI:30915 (5)
CHEBI:55328 (5)
CHEBI:116314 (4)
CHEBI:1582 (4)
CHEBI:15843 (4)
CHEBI:15891 (4)
CHEBI:15971 (4)
CHEBI:16015 (4)
CHEBI:16027 (4)
CHEBI:16031 (4)
CHEBI:16235 (4)
CHEBI:16335 (4)
CHEBI:16393 (4)
CHEBI:16704 (4)
CHEBI:16737 (4)
CHEBI:16828 (4)
CHEBI:17154 (4)
CHEBI:17203 (4)
CHEBI:17211 (4)
CHEBI:17254 (4)
CHEBI:17351 (4)
CHEBI:17368 (4)
CHEBI:17405 (4)
CHEBI:17509 (4)
CHEBI:17533 (4)
CHEBI:17596 (4)

Metabolite Name

Guanine (7)
Betaine (6)
Biotin (6)
Creatinine (6)
Genistein (6)
Hypoxanthine (6)
L-Valine (6)
Propionylcarnitine (6)
Pyridoxamine (6)
Salicylic acid (6)
Uracil (6)
1-Methyladenosine (5)
1-Methylguanine (5)
4-Pyridoxic acid (5)
Adenine (5)
Adenosine (5)
Arachidonic acid (5)
Bilirubin (5)
Creatine (5)
Cuminaldehyde (5)
Cytidine (5)
Cytosine (5)
Indole (5)
Isoproterenol (5)
L-Tryptophan (5)
L-Tyrosine (5)
Leucylproline (5)
Oleamide (5)
Ornithine (5)
Pantothenic acid (5)

Study type

Transcription profiling by array (12)
ChIP-seq (11)
RNA-seq of coding RNA (7)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (3)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (463)
2023 (398)
2022 (389)
2024 (365)
2021 (281)
2020 (223)
2019 (143)
2018 (113)
2026 (85)
2017 (79)
2015 (68)
2016 (64)
2014 (44)
2013 (34)
2012 (17)
2011 (14)
2010 (12)
2009 (7)
2008 (3)
2007 (3)
2003 (2)
2006 (1)

Lab affiliation

Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
1. Department of Pharmacology (National Key Laboratory of Frigid Zone Cardiovascular Disease, Key Laboratory of Cardiovascular Research, Ministry of Education), College of Pharmacy, Harbin Medical University (1)
1Cancer Institute, the Second Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou 310029, China 2Cancer Center, Zhejiang University, Hangzhou 310058, China 3Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou 310053, China (1)
Biochemistry and Molecular Genetics, Hematology and Oncology, Department of Medicine, Northwestern University, USA (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Department of Biochemistry and Molecular Biology Department of Urology, Mayo clinic, Rochester MN, US (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Clinical Laboratory, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, China (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
ETH Zurich (1)
Florey Institute, University of Melbourne, Parkville, Victoria 3052, Australia (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou, China (1)
Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China (1)
Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province, Key Laboratory of Biopesticide and Chemical Biology of Education Ministry, Proteomic Research Center, and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China (1)
Mass Spectrometry Facility, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch at Galveston, USA (1)
National Key Laboratory of Veterinary Public Health and Safety, Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China (1)
Professor of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy 3307 N Broad Street Room 552 Philadelphia, PA 19140 Tel: 215 707 9228 (1)
School of pharmaceutical science,Sun Yat-Sen University (1)
State Key Laboratory of Frigid Zone Cardiovascular Diseases (SKLFZCD), Department of Pharmacology (State Key Labratoray -Province Key Laboratories of Biomedicine-Pharmaceutics of China, Key Laboratory of Cardiovascular Research, Ministry of Education), College of Pharmacy, Harbin Medical University, Harbin 150081, China. (1)
State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (1)

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Transcription profiling of human naive T cells isolated from peripheral blood treated with 1,25 (OH)2 vitamin D3 induces expression of CCR10 and other genes

Human naive T cells from peripheral blood were cultured in 24 wells coated with anti-CD3 and anti-CD28 antibodies in the presence or absence of retinoid acid, IL-12, and 1,25 (OH)2 vitamin D3. The T cells were FACS-sorted based on expression of CD3, integrin alpha4beta7, cutaneous lymphocyte antige...

ORGANISM(S): Homo sapiens

2008-06-15 | E-GEOD-6743 | biostudies-arrayexpress

Transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions

Investigation of whole genome gene expression level changes in Thermoplasma acidophilum cultured under aerobic and anaerobic conditions. The analysis are further described in Na Sun, Cuiping Pan, Stephan Nickell, Matthias Mann, Wolfgang Baumeister, and István Nagy, Quantitative proteome and transcri...

ORGANISM(S): Thermoplasma acidophilum DSM 1728

2011-09-26 | E-GEOD-21956 | biostudies-arrayexpress

Not available

S-EPMC9657346 | biostudies-literature

Evolution and Functional Divergence of SUN Genes in Plants.

Not available

S-EPMC7982736 | biostudies-literature

Sox10 Binding Analysis in the Central and Peripheral Nervous System

ChIP-seq of Sox10 in spinal cord and sciatic nerve 2 independent Sox10 ChIP samples each for spinal cord (CNS) and sciatic nerve (PNS), with respective inputs

ORGANISM(S): Rattus norvegicus

2015-04-01 | E-GEOD-64703 | biostudies-arrayexpress

Elucidating the role of MICAL1 in pan-cancer using integrated bioinformatics and experimental approaches.

Not available

S-EPMC10984120 | biostudies-literature

DNA methylation profiling of healthy elderly individuals with different lifestyle habits

Illumina Infinium EPIC HumanMethylation BeadChip data from saliva DNA samples from a healthy elderly cohort with individuals in the age range 70-95 in Southwest Sweden. The cohort was stratified into study groups based on participants´answers to a questionnaire of different lifestyle factors includi...

ORGANISM(S): Homo sapiens

2022-07-23 | E-MTAB-11445 | biostudies-arrayexpress

Pan-Cancer Landscape of NEIL3 in Tumor Microenvironment: A Promising Predictor for Chemotherapy and Immunotherapy.

Not available

S-EPMC9817722 | biostudies-literature

PGAP: pan-genomes analysis pipeline.

Not available

S-EPMC3268234 | biostudies-literature

A GPC3-targeting Bispecific Antibody, GPC3-S-Fab, with Potent Cytotoxicity.

Not available

S-EPMC6126450 | biostudies-literature