Pao1 - OmicsDI

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Unknown (1131)
Genomics (662)
Transcriptomics (398)
Proteomics (178)
Other (12)
Metabolomics (10)
Models (2)

Organisms

Pseudomonas aeruginosa (234)
Pseudomonas aeruginosa PAO1 (229)
Homo sapiens (14)
Mus musculus (12)
Escherichia coli str. K-12 substr. MG1655 (8)
Pseudomonas putida (6)
Pseudomonas aeruginosa PA14 (5)
Escherichia coli (5)
Pseudomonas putida KT2440 (5)
Pseudomonas (4)
Pseudomonas aeruginosa UCBPP-PA14 (3)
Phikzvirus phiKZ (3)
Staphylococcus aureus (3)
Danio rerio (2)
Populus (2)
Pseudomonas chlororaphis subsp. aureofaciens 30-84 (2)
Pseudomonas aeruginosa PAHM4 (2)
Hordeum vulgare (2)
Paenarthrobacter nicotinovorans (2)
Allochromatium vinosum DSM 180 (2)
Pseudomonas fluorescens Pf0-1 (2)
Pseudomonas paraeruginosa PA7 (2)
Pseudomonas savastanoi pv. phaseolicola 1448A (2)
Corynebacterium glutamicum (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Pseudomonas fluorescens (2)
Pseudomonas aeruginosa MPAO1/P1 (1)
Dictyostelium discoideum (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Drosophila melanogaster (1)

Organisms

Pseudomonas aeruginosa PAO1 (223)
Pseudomonas aeruginosa (167)
Mus musculus (12)
Homo sapiens (9)
Pseudomonas phage J3 (2)
synthetic metagenome (2)
Pseudomonas aeruginosa PAO1-VE13 (1)
Pseudomonas aeruginosa PAO1-VE2 (1)
Pseudomonas aeruginosa PAO1H2O (1)
Pseudomonas aeruginosa MPAO1/P2 (1)
Pseudomonas aeruginosa PAO1-CipR (1)
Pseudomonas chlororaphis subsp. aureofaciens 30-84 (1)
unclassified dsDNA viruses (1)
Pseudomonas aeruginosa PAO1-GFP (1)
Pseudomonas aeruginosa MPAO1/P1 (1)
Pseudomonas phage BL3 (1)
Pseudomonas phage BL1 (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Pseudomonas aeruginosa PA14 (1)
Pseudomonas aeruginosa PAK (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Hordeum vulgare (1)
Pseudomonas putida (1)
bacterial mixed DNA library (1)
Pseudomonas syringae (1)
Escherichia coli (1)
Danio rerio (1)
Arabidopsis thaliana (1)

Repository

ENA (633)
geo (275)
biostudies-arrayexpress (165)
pride (141)
MassIVE (20)
iProX (14)
GNPS (8)
BioModels (2)
MetaboLights (2)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (20)
Permanent cell line cell (4)
Cell suspension culture (3)
Whole body (3)
Epithelial cell (3)
Infected cell (1)
Airway fluid (1)
Biofilm (1)
Endospore (1)
Cornea (1)
HEK-293 cell (1)
Sputum (1)
Bacterial protein (1)
Blood serum (1)
HeLa cell (1)
Skeletal muscle cell (1)
Lung (1)
Neutrophil (1)

Disease

Cystic fibrosis (7)
Disease free (3)
Pseudomonas aeruginosa rsmA mutant infected (1)
P. aeruginosa infected (1)
Not Available (1)
Keratitis (1)
Bacterial infectious disease (1)

Technology Type

Mass Spectrometry (141)
Shotgun proteomics (80)
Bottom-up proteomics (31)
Data-dependent acquisition (18)
Gel-based experiment (12)
Top-down proteomics (6)
SWATH MS (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (2)
Affinity proteomics (2)
MSE (2)
Data-independent acquisition (2)
SRM/MRM (2)
Mass spectrometry imaging (1)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

ScanArray [PerkinElmer] (7)
Impact HD (6)
NextSeq 500 (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Q Exactive HF (4)
Q Exactive (3)
Orbitrap Fusion Lumos (3)
Impact (2)
MaXis (2)
Orbitrap Fusion ETD (2)
LTQ Orbitrap (2)
GenePix 4000B scanner (Axon, Foster City, CA) (1)
RNeasy Plus Kit (Qiagen) (1)
NovaSeq PE150 (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
MicrOTOF-Q II (1)
Instrument (1)
Orbitrap Q Exactive HF-X (1)
LTQ FT (1)
Xevo G2 Q-Tof (1)
ACQUITY UPLC I-Class (1)
LTQ Orbitrap Velos (1)
LTQ (1)
HPLC-LTQ-MS (1)
Liquid Chromatography MS - - hilic (1)
LTQ-FT (1)

Publication Date

2020 (45)
2022 (41)
2021 (40)
2012 (39)
2024 (38)
2025 (37)
2011 (37)
2015 (36)
2026 (35)
2023 (34)
2016 (33)
2014 (32)
2018 (31)
2008 (31)
2019 (29)
2013 (29)
2010 (11)
2017 (10)
2009 (10)
2007 (9)
2006 (6)
2005 (5)
2004 (1)

UNIPROT ID/AC

CATC_PSEAE (1)
Q9I0X7_PSEAE (1)
G3XCU5_PSEAE (1)
NCASE_PSEAE (1)
Q9I2B9_PSEAE (1)
Q9I227_PSEAE (1)
Q9HYJ7_PSEAE (1)
Q9I3H8_PSEAE (1)
Q9I4V7_PSEAE (1)
Q9I6G6_PSEAE (1)
Q9I0F6_PSEAE (1)
Q9HT08_PSEAE (1)
PY2CR_PSEAE (1)
Q9I554_PSEAE (1)
Q9I1J9_PSEAE (1)
Q9I2C8_PSEAE (1)
Q9HZR9_PSEAE (1)
PHHY_PSEAE (1)
Q9HUH0_PSEAE (1)
Q9HZ08_PSEAE (1)
Q9HTB2_PSEAE (1)
Q9HXT0_PSEAE (1)
Y2418_PSEAE (1)
Q9HUR5_PSEAE (1)
Q9I1D7_PSEAE (1)
Q9HU84_PSEAE (1)
HDAH_PSEAE (1)
Y1839_PSEAE (1)
Q9I496_PSEAE (1)
Q9I124_PSEAE (1)

CHEBI ID

CHEBI:42320 (1)
CHEBI:4348 (1)
CHEBI:47764 (1)
CHEBI:116311 (1)
CHEBI:8453 (1)
CHEBI:3444 (1)
CHEBI:116537 (1)
CHEBI:585244 (1)
CHEBI:3721 (1)
CHEBI:5452 (1)
CHEBI:116289 (1)
CHEBI:3717 (1)
CHEBI:75 (1)
CHEBI:56558 (1)
CHEBI:8815 (1)
CHEBI:4968 (1)
CHEBI:10066 (1)
CHEBI:2231 (1)
CHEBI:8610 (1)
CHEBI:4523 (1)
CHEBI:4552 (1)
CHEBI:2351 (1)
CHEBI:3285 (1)
CHEBI:7707 (1)
CHEBI:2008 (1)
CHEBI:5915 (1)
CHEBI:10573 (1)
CHEBI:7372 (1)
CHEBI:1408 (1)
CHEBI:4124 (1)

Metabolite Name

KDPG (1)
FBP (1)
6PG (1)
F1P (1)
F6P (1)
S7P (1)
[PE (18:0/18:0)] 1,2-dioctadecanoyl-sn-glycero-3-phosphoethanolamine (1)
[FA (4:2/20:4)] N-butyl-5Z,8Z,11Z,14Z-eicosatetraenoyl amine (1)
Trans-Hexadec-2-enoyl-CoA (1)
[PR] Casbene (1)
[FA ethyl(20:4)] N-ethyl-5Z,8Z,11Z,14Z-eicosatetraenoyl amine (1)
Hexadec-7Z-enoic acid (1)
[SP (14:0)] 1-deoxy-tetradecasphing-13-enine (1)
[FA hydroxy(20:4)] eicosatetraenoyl amine (1)
[FA (20:3)] N-(8Z,11Z,14Z-eicosatrienoyl)-ethanolamine (1)
[FA hydroxy(22:0)] 13-hydroxy-docosanoic acid (1)
[SP (14:0)] 1-deoxy-tetradecasphinganine (1)
[PR] Tretinoin/All-Trans Retinoic Acid (1)
Cis,cis-dodeca-3,6-dienoic acid (1)
7-methyl-3-oxooctanoic acid (1)
[FA (25:0)] pentacosanoic acid (1)
[FA (23:0)] tricosanoic acid (1)
FA (20:0) (1)
FA (17:0) (1)
FA methyl(14:0) (1)
FA (14:1) tetradecenoic acid (1)
FA (12:1) dodecenoic acid (1)
G6P (1)
Decanoyl-CoA (1)
(+)-7-Isomethyljasmonate (1)

First Public Date

2014 (102)
2022 (58)
2024 (56)
2025 (55)
2026 (54)
2023 (51)
2020 (48)
2021 (46)
2018 (36)
2019 (32)
2015 (32)
2016 (25)
2017 (20)
2013 (17)
2010 (1)

Modelling Approach

Steady-state model (1)
Constraint-based model (1)

Lab affiliation

Applied Microbiology, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany (3)
Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology, Chinese Academy of Sciences (3)
Translational Research in Inflammation and Immunology Research Unit (TRIRU), Department of Mi-crobiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama 4 Road, Pathumwan, Bangkok 10330, Thailand (2)
Institute for Molecular Infection Biology, Julius Maximilian University Wuerzburg Helmholtz Institute for RNA-based Infection Research, Helmholtz Centre for Infection Research, Wuerzburg (2)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (2)
CNRS, University of Strasbourg, UMR7242, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (2)
UCSF (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
EDyP (2)
Sichuan University (2)
Department of Chemistry and Biomolecular Sciences Faculty of Science and Engineering Macquarie University Sydney, New South Wales, Australia (1)
CNRS, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, France. Université de Strasbourg, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, France. (1)
Centre for Functional Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, D-85748 Garching, Germany. (1)
Technical University of Munich, Department of Chemistry, Chair of Organic Chemistry II, Lichtenbergstraße 4, 85748 Garching, Germany (1)
University of Texas at Austin (1)
Proteomics Unit - National Center for Biotechnology (CNB-CSIC) (1)
Biochemistry & Proteomics Group Department of Chemistry & Biomolecular Science, Clarkson University 8 Clarkson Avenue, Potsdam, NY, 13699-5810, USA Office: (315) 268-7763; Lab: (315) 268-2348; Fax: (315) 268-6610 (1)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA. (1)
Department of Chemical Sciences, University of Naples “Federico II”, Naples, Italy. (1)
Department of Chemistry, Chair of Organic Chemistry II, Technical University of Munich, Germany (1)
Department of Clinical Science (IKVL), Lund Division of Infection Medicine Lund University Sweden (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India (1)
Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, United States (1)
Molecular and Cellular Biology Department, University of Guelph, Guelph, ON, Canada (1)
Associate Professor in Proteomics, Head of Proteomics, Centre for Proteomic Research, University of Southampton, UK (1)
The Mina and Everard Goodman Faculty of Life Sciences Bar-Ilan University Ramat-Gan 52900, Israel (1)
CNRS, UMR7242, UMR7242, Université de Strasbourg, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (1)
Medical Research Center, Kantonspital St. Gallen, St. Gallen, Switzerland Division of Infectious Diseases and Hospital Epidemiology (1)
1Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (1)
Medical Mycology Lab Biology Department Maynooth University Ireland (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

bacteria (402)
viruses (5)

Modification

Not available (2)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (124)
RNA-seq of coding RNA (22)
Transcription profiling by tiling array (4)
Unknown experiment type (2)
High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (104)
2021 (96)
2023 (91)
2024 (89)
2020 (83)
2025 (81)
2018 (78)
2016 (69)
2019 (67)
2015 (63)
2017 (61)
2014 (56)
2013 (54)
2011 (52)
2012 (50)
2008 (41)
2009 (27)
2010 (24)
2007 (15)
2006 (15)
2000 (13)
2026 (11)
2004 (11)
2001 (11)
2002 (8)
1999 (8)
2003 (7)
2005 (6)
1998 (4)

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PAO1-Lon-ciprofloxacin

Microarray experiments were preformed comparing the effect of sub-inhibitory concentrations of ciprofloxacin on five independent cultures of PAO1 and the PAO1 Lon mutant

ORGANISM(S): Pseudomonas aeruginosa PAO1

2012-03-25 | E-MTAB-1000 | biostudies-arrayexpress

Genome wide transcriptional analysis of P. aeruginosa PAO1, response to phosphate limitation

P. aeruginosa PAO1 grown as lawns on Nematode Growth Medium prepared without supplementation (NGM Pi<0.1 mM) has high killing ability against C. elegans, however, no mortality in worms has been observed during 48 hrs when feeding on PAO1 lawns grown on phosphate supplemented full NGM Pi 25 mM, pH 6....

ORGANISM(S): Pseudomonas aeruginosa PAO1

2011-07-26 | E-GEOD-30967 | biostudies-arrayexpress

MBains PAO1 cprR (CP28)

Micoarrays were used to obtain gene expression in mid-log phase PAO1::cprR(PA3077) with the treatment of 12ug/ml CP28 vs mid-log phase PAO1 with the treatment of 12ug/ml CP28

ORGANISM(S): Pseudomonas aeruginosa PAO1

2012-12-05 | E-MTAB-1276 | biostudies-arrayexpress

Pseudomonas aeruginosa PAO1

PAO1+Iberin Transcriptome

PRJNA213568 | ENA

Pseudomonas aeruginosa PAO1

Pseudomonas aeruginosa PAO1 Transcriptome

PRJNA360055 | ENA

Transcription profiling of P.aeruginosa PAO1 and PAO1 phoQ::xylE

Five biological repeats of P.aeruginosa PAO1 and five biological repeats of P.aeruginosa PAO1 phoQ::xylE were grown in mineral medium BM2 using glucose as the carbon source and with 2mM MgSO4. Microarray experiments were done using microarray slides and protocols from TIGR on cells from mid-log pha...

ORGANISM(S): Pseudomonas aeruginosa

2008-12-20 | E-FPMI-18 | biostudies-arrayexpress

Response of Pseudomonas aeruginosa PAO1 to low shear modeled microgravity

Anticipating the risk for infectious disease during space exploration and habitation is a critical factor to ensure safety, health and performance of the crewmembers. As a ubiquitous environmental organism that is occasionally part of the human flora, Pseudomonas aeruginosa could pose a health hazar...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2010-07-29 | E-GEOD-16970 | biostudies-arrayexpress

Pseudomonas aeruginosa PAO1

Pseudomonas aeruginosa PAO1 Raw sequence reads

PRJNA832877 | ENA

Pseudomonas aeruginosa PAO1

Pseudomonas aeruginosa PAO1 Genome sequencing and assembly

PRJNA1004877 | ENA

Pseudomonas aeruginosa PAO1

Pseudomonas aeruginosa PAO1 Genome sequencing and assembly

PRJNA540116 | ENA