Park B S BS - OmicsDI

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With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
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CHEBI ID

CHEBI:15882 (2)
CHEBI:15891 (2)
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CHEBI:28842 (2)
CHEBI:28875 (2)
CHEBI:57593 (2)
CHEBI:64023 (2)

Metabolite Name

CDP-ethanolamine (2)
Cytosine (2)
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N6,N6,N6-Trimethyl-L-lysine (2)
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Pantothenate (2)
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(+)-12-(2-Cyclopenten-1-yl)-2-dodecanone (1)
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(+)-Syringaresinol O-beta-D-glucoside (1)
(+)-gamma-Hydroxy-L-homoarginine (1)
(+/-)-6-Acetonyldihydrochelerythrine (1)
(+/-)-6-Acetonyldihydrosanguinarine (1)
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(1-Ribosylimidazole)-4-acetate (1)
(10S)-Juvenile hormone III acid diol (1)

Study type

Transcription profiling by array (251)
ChIP-seq (148)
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Transcription profiling by tiling array (9)
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Methylation profiling by high throughput sequencing (5)
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DNA-seq (2)
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Cell line - One-color microarray (1)
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Release Date

2013 (184)
2014 (82)
2012 (76)
2011 (76)
2015 (71)
2021 (68)
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2010 (57)
2025 (55)
2016 (52)
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Lab affiliation

Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
College of Pharmacy, Kyungpook National University, 80 Daehak-ro, Buk-gu, Daegu 41566 Korea (1)
Korea Institute of Science and Technology (1)
Krefting Research Centre, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Sweden (1)

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DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Gene expression data of BCR-ABL1 transformed B cell precursors from BCL6 wild-type and BCL6 knockout mice

To elucidate the mechanism of BCL6-mediated pre-B cell survival signaling, we investigated the gene expression pattern in BCR-ABL1-transformed BCL6+/+ and BCL6-/- B cell precursors. Pharmacological inhibition of BCR-ABL1 was performed with the BCR-ABL1 kinase inhibitor STI571 (Imatinib). BCR-ABL1 t...

ORGANISM(S): Mus musculus

2010-05-27 | E-GEOD-20987 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Evaluating remote sensing datasets and machine learning algorithms for mapping plantations and successional forests in Phnom Kulen National Park of Cambodia.

Not available

S-EPMC6814064 | biostudies-literature

Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast [RNA-seq]

Spt6 is a highly conserved histone chaperone that interacts directly with both RNA polymerase II and histones to regulate gene expression. To gain a comprehensive understanding of the requirements for this critical factor, we have performed genome-wide analyses of transcription, chromatin structure...

ORGANISM(S): Schizosaccharomyces pombe

2013-10-09 | E-GEOD-49573 | biostudies-arrayexpress

Acute Stress Induced Increase in Histone H3 Lys 9 Trimetylation in Rat Hippocampus

We utilized ChIP Seq to examine the the genomic localization of the increase in H3K9 trimethylation we had previously observed in the hippocampus as a consequence of acute restraint stress in rats (Hunter et. al PNAS 2009). Rats were restrained for 30 minutes, allowed to recover for 1 hour and then ...

ORGANISM(S): Rattus norvegicus

2012-11-02 | E-GEOD-41217 | biostudies-arrayexpress

Pervasive effects of aging on gene expression in wild wolves

We sequenced total RNA from whole blood samples of 27 wild gray wolves from Yellowstone National Park. Gene expression level analysis of both male and female wolves, ranging from ages 0.8-8.8 years.

ORGANISM(S): Canis lupus

2016-07-27 | E-GEOD-80440 | biostudies-arrayexpress

Transcription profiling of mouse tet inducible NIH 3T3 cells expressing ATPase-defective BRG-1 to identify SWI-SNF-Regulated Genes

NIH 3T3 cells (mouse fibroblasts) were engineered such that the dominant negative ATPase-defective BRG-1 is expressed via the tet-off inducible expression system to inactivate the SWI-SNF chromatin remodeling complexes (Mol Cell Biol 20, 2839). These cell lines have been used for several studies to ...

ORGANISM(S): Mus musculus

2006-01-01 | E-MEXP-434 | biostudies-arrayexpress

Staphylococcus aureus RN4220 wild-type extracellular vesicle proteome

Bacteria actively secrete extracellular vesicles (EVs), spherical nano-sized proteolipids into the extracellular milieu. Bacterial EVs have gained wide interests as non-living complex vaccines or delivery vehicles. However, no studies have used bacterial EVs in treating cancer so far. Our results sh...

ORGANISM(S): Staphylococcus aureus

2018-11-22 | PXD006913 | Pride

PIWI silencing mechanism involving the retrotransposon nimbus orchestrates resistance to infection with Schistosoma mansoni in the snail vector, Biomphalaria glabrata.