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OtherDigestion and depletion of abundant proteins improves proteomic coverage.
Data from Yates lab web site. Experiment: yeast control replicate 2, file: 120211_Yeast_Control2_Step02.mzml. Published as part of Nat Methods. 2013 Jan;10(1):54-6 9 . From the Abstract: {{i}} We exploited the abundance-dependent Michaelis-Menten kinetics of trypsin digestion to selectively digest ...
ORGANISM(S): Yeast 
GPM32320001404 | GPMDB
ProteomicsHuman Fecal Gut Microbiome proteomics
5 human fecal gut samples, collected and prepared for standard MudPIT data collection from healthy volunteers, searched with the ComPIL database. x3 replicates each
ORGANISM(S): Human Metagenome (ncbitaxon:646099) 
2017-10-18 | MSV000081622 | MassIVE
ProteomicsnextPP for chromosome-based proteomic research using neXtProt and GENCODE databases
In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-07-25 | MSV000081385 | MassIVE
ProteomicsAlzheimer's disease proteomics
This project aims to determine how the brain proteome is remodeled in Alzheimer's disease (AD). AD is pathologically characterized by an accumulation of insoluble aggregates composed of Abeta peptides in the brain and is clinically characterized by progressive memory impairment. While the precise pa...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2016-12-19 | MSV000080431 | MassIVE
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