Parker A A - OmicsDI

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Unknown (8865)
Proteomics (269)
Transcriptomics (184)
Genomics (141)
Metabolomics (14)
Models (3)
Genomic (2)
Methylation profiling (1)
Other (1)

Organisms

Chlamydomonas reinhardtii (242)
Marchantia polymorpha subsp. ruderalis (242)
Methylocystis sp. (242)
Porites pukoensis (242)
Bothrops insularis (242)
Bothrops jararaca (242)
Bothrops jararacussu (242)
Bothrops cotiara (242)
Homo sapiens (192)
Mus musculus (42)
Arabidopsis thaliana (13)
Rattus norvegicus (5)
Canis lupus familiaris (5)
Drosophila melanogaster (4)
synthetic construct (3)
Campylobacter jejuni (3)
Saccharomyces cerevisiae (3)
Pseudomonas aeruginosa (3)
Dichelobacter nodosus (2)
Escherichia coli O157:H7 (2)
Bombyx mori (2)
Bos taurus (2)
Escherichia coli (2)
Campylobacter jejuni subsp. jejuni 81116 (1)
Macaca mulatta (1)
Fragilariopsis cylindrus (1)
Salmo salar (1)
Gallus gallus (1)
Danio rerio (1)
Saccharomyces cerevisiae BY4741 (1)

Organisms

Homo sapiens (11)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (4)
Mus musculus (4)
Campylobacter jejuni (2)
Plasmodium falciparum (2)
aquatic metagenome (2)
Boechera stricta (1)
Sarcophaga bullata (1)
Saccharomyces cerevisiae BY4741 (1)
Enterococcus faecalis (1)
Drosophila melanogaster (1)

Repository

pride (242)
biostudies-arrayexpress (198)
EGA (79)
ENA (44)
MassIVE (21)
MetaboLights (11)
geo (6)
PanoramaPublic (4)
BioModels (3)
GNPS (3)
dbGaP (2)
PeptideAtlas (2)

Tissue

Cell culture (45)
Epithelial cell (18)
Skeletal muscle (17)
Liver (16)
Heart (10)
Blood plasma (9)
Brain (7)
Wound fluid (5)
Hair shaft (5)
Kidney (5)
Fat cell (4)
Cardiomyocyte cell line (4)
Macrophage (4)
Cell suspension culture (4)
Fibroblast (4)
Permanent cell line cell (4)
Colon (4)
Blood (4)
Epithelial ovarian cancer cell (3)
Myoblast (3)
Skeletal muscle myoblast (3)
Tooth enamel (3)
Peripheral blood mononuclear cell (3)
Spleen (3)
Leaf (3)
Others (2)
Myoblast cell line (2)
Skeletal muscle cell line (2)
Tongue (2)
Myotube (2)

Disease

Cardiovascular system disease (7)
Disease free (7)
Cervix carcinoma (5)
Type 2 diabetes mellitus (5)
Wounds and Injuries (5)
Breast cancer (4)
Acute leukemia (4)
Amyotrophic lateral sclerosis type 1 (2)
Non-small cell lung carcinoma (2)
Colitis (2)
Prostate adenocarcinoma (2)
Glioblastoma (2)
Colon cancer (2)
Wilms' tumor (1)
Ichthyosis (1)
Uterine fibroid (1)
Uterine benign neoplasm (1)
Osteonecrosis (1)
Bloom syndrome (1)
Ovarian clear cell carcinoma (1)
Ankylosing spondylitis (1)
Cardiomyopathy (1)
Peripheral primitive neuroectodermal tumor (1)
Non-alcoholic steatohepatitis (1)
Diabetes mellitus (1)
Esophageal cancer (1)
Abnormality of hair pigmentation (1)
Endometrial cancer (1)
Cutaneous malignant melanoma 1 (1)
Acquired immunodeficiency syndrome (1)

Technology Type

Mass Spectrometry (242)
Shotgun proteomics (128)
Affinity purification coupled with mass spectrometry proteomics (37)
Bottom-up proteomics (36)
SWATH MS (34)
Data-dependent acquisition (23)
Data-independent acquisition (12)
Mass spectrometry (10)
Top-down proteomics (8)
Illumina HiSeq 2000 (6)
Gel-based experiment (6)
Immunopeptidomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Affinity proteomics (2)
DiaPASEF (2)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2000 (4)
Illumina HiSeq 4000 (3)
Q Exactive (3)
LTQ Orbitrap Elite (3)
Orbitrap Fusion Lumos (3)
Orbitrap Fusion (3)
LTQ Orbitrap Velos (3)
Illumina NovaSeq X (2)
Illumina NovaSeq 6000 (2)
6470A Agilent QQQ (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)
Thermo Scientific Orbitrap Fusion Lumos Tribrid (1)
LTQ (1)
MicrOTOF-Q II (1)
TripleTOF 6600 (1)
LTQ Orbitrap XL (1)
TripleTOF 5600 (1)
Q Exactive HF-X (1)
TimsTOF Pro 2 (1)
LECO Pegasus 4D (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS – positive - reverse phase (1)
Liquid Chromatography MS – negative - hilic (1)

Publication Date

2021 (49)
2025 (46)
2010 (39)
2023 (37)
2024 (30)
2022 (30)
2019 (29)
2012 (28)
2015 (24)
2026 (22)
2018 (19)
2020 (19)
2014 (18)
2013 (18)
2011 (17)
2017 (14)
2016 (12)
2009 (10)
2008 (10)
2007 (7)
2006 (5)
2005 (4)
2003 (1)

UNIPROT ID/AC

P43268 (2)
Q96C34 (2)
Q9BVV8 (2)
Q9BUG6 (2)
P07550 (2)
P55197 (2)
Q13233 (2)
Q96HB5 (2)
P19484 (2)
Q9NWS9 (2)
Q8TAP9 (2)
Q3MIN7 (2)
Q15735 (2)
Q6PJ61 (2)
Q96NU1 (2)
Q8TBE0 (2)
Q9H2G4 (2)
Q8N0Y2 (2)
Q9Y2J4 (2)
Q9Y2D9 (2)
P30281 (1)
P30279 (1)
Q13309 (1)
O96020 (1)
Q01094 (1)
P06400 (1)
P20248 (1)
P24864 (1)
P24385 (1)
P01106 (1)

ENSEMBL ID

ENSP00000345571 (1)
ENSG00000101412 (1)
ENST00000343380 (1)

CHEBI ID

CHEBI:18012 (4)
CHEBI:30769 (4)
CHEBI:17345 (3)
CHEBI:15351 (3)
CHEBI:22660 (3)
CHEBI:30915 (3)
CHEBI:32816 (3)
CHEBI:16108 (3)
CHEBI:6650 (3)
CHEBI:15741 (3)
CHEBI:16027 (3)
CHEBI:15345 (2)
CHEBI:15996 (2)
CHEBI:15467 (2)
CHEBI:17552 (2)
CHEBI:16908 (2)
CHEBI:16474 (2)
CHEBI:15422 (2)
CHEBI:30887 (2)
CHEBI:15531 (2)
CHEBI:17489 (2)
CHEBI:18237 (2)
CHEBI:17150 (2)
CHEBI:16356 (2)
CHEBI:15978 (2)
CHEBI:16856 (2)
CHEBI:17858 (2)
CHEBI:16761 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)

Metabolite Name

Alpha-ketoglutarate (3)
Citrate (3)
GTP?? (2)
Glutathione, reduced (2)
2-phosphoglycolate (2)
HMG-CoA (2)
DHAP (2)
CGMP (2)
Acetoacetyl-CoA (2)
GTP (2)
CAMP (2)
NADP (2)
Malonyl-CoA (2)
Isocitrate (2)
NADPH (2)
NAD (2)
GMP (2)
GDP (2)
ATP (2)
NADH (2)
Glutathione, oxidized (2)
Fumarate (2)
Acetyl-CoA (2)
Glycerol 3-phosphate (2)
Succinate (2)
Glucose 6-phosphate (2)
Glutamine (2)
Leucine (2)
Glutamate (2)
Uracil (2)

First Public Date

2014 (7)
2024 (5)
2021 (5)
2013 (5)
2026 (4)
2020 (4)
2017 (4)
2019 (3)
2018 (3)
2016 (3)
2023 (1)

Modelling Approach

Machine learning (1)
Agent-based model (1)

Lab affiliation

The University of Melbourne (52)
The University of Sydney (18)
Vividion Therapeutics (4)
Professor and Tier 1 Canada Research Chair in Proteinase Proteomics and Systems Biology at the University of British Columbia, Centre for Blood Research (4)
Cedars-Sinai Medical Center (4)
University of Oxford (4)
Department of Chemistry, The Scripps Research Institute, La Jolla, CA, USA (3)
Department of Environmental Toxicology, University of California, Davis, USA (3)
University of Oxford University of Dundee (3)
School of Life and Environmental Sciences, University of Sydney, NSW Australia (2)
La Trobe University, Melbourne, Australia (2)
Department of Chemistry The Scripps Research Institute (2)
The University of Sydney, Australia (2)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology (2)
Biochemistry and molecular biology, Duong lab, University of British Columbia (2)
Department of Chemistry, Scripps Research (2)
University of California, Davis (2)
Peter MacCallum Cancer Centre, Melbourne, Australia Department of Anatomy and Physiology, The University of Melbourne, Melbourne, VIC, Australia (2)
Scripps Research (2)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (2)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Senior Scientist, Molecular Oncology, BC Cancer Research Centre/University of British Columbia (1)
Biomedical Research, Novartis Pharma AG (1)
Director UAB Proteomics Facility, Professor UAB Anesthesiology (1)
The University of Dundee (1)
Australian Proteome Analysis Facility, Macquarie University, Sydney, Australia (1)
Chair in Metabolic Systems Biology, Charles Perkins Centre, The University of Sydney, Australia (1)

IsPrivate

False (3)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
TransQST (1)

Classification

bacteria (3)
protozoa (2)

Study type

Transcription profiling by array (128)
RNA-seq of coding RNA (20)
ChIP-seq (11)
Comparative genomic hybridization by array (10)
Unknown experiment type (9)
Genotyping by array (6)
DNA-seq (5)
Other (3)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
CLIP-seq (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (992)
2021 (936)
2023 (828)
2024 (748)
2025 (739)
2020 (701)
2019 (643)
2018 (601)
2017 (500)
2016 (390)
2015 (389)
2014 (317)
2013 (214)
2012 (213)
2010 (176)
2011 (163)
2026 (121)
2009 (107)
2008 (83)
2007 (50)
2006 (45)
2005 (33)
2004 (25)
2002 (11)
2003 (10)
2001 (10)
1999 (8)
2000 (5)
1997 (2)
1998 (1)

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Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights

Glycerol 3-phosphate phosphatase/PGPH-2 counters metabolic stress and promotes healthy aging via a glycogen sensing-AMPK-HLH-30-autophagy axis in C. elegans

Metabolic stress caused by excess nutrients accelerates aging. We recently demonstrated that the newly discovered enzyme glycerol-3-phosphate phosphatase (G3PP; gene Pgp), which operates an evolutionarily conserved glycerol shunt that hydrolyzes glucose-derived glycerol-3-phosphate to glycerol, coun...

2024-02-07 | MTBLS6847 | MetaboLights

Comparative Genomic Analysis of Clinical Strains of Campylobacter jejuni from South Africa

Background. The bacterial foodborne pathogen Campylobacter jejuni is a common cause of acute gastroenteritis and is also associated with the postinfectious neuropathies, Guillain-BarrÃ© and Miller Fisher syndromes. This study described the use of multilocus sequence typing and DNA microarrays to e...

ORGANISM(S): Campylobacter jejuni

2010-05-27 | E-GEOD-9862 | biostudies-arrayexpress

Nucleases Encoded by Integrated Elements CJIE2 and CJIE4 Inhibit Natural Transformation of Campylobacter jejuni

The species Campylobacter jejuni is naturally competent for DNA uptake; nevertheless, nonnaturally transformable strains do exist. For a subset of strains we previously showed that a periplasmic DNase, encoded by dns, inhibits natural transformation in C. jejuni. In the present study, genetic factor...

ORGANISM(S): Campylobacter jejuni

2009-11-13 | E-GEOD-18399 | biostudies-arrayexpress

Parker Solar Probe Imaging of the Night Side of Venus.

Not available

S-EPMC9286398 | biostudies-literature

Fibreoptic Orotracheal Intubation of Obese Patients Using Parker Flex-Tip vs. Standard Endotracheal Tube.

Not available

S-EPMC6756311 | biostudies-literature

The exercise-regulated skeletal muscle phosphoproteome

Four healthy male volunteers (age: 24 - 27; BMI: 24.2 - 25.9 kg/m2) underwent a single bout of high-intensity bicycle exercise reaching a VO2 max approximately 95% with blood samples and muscle biopsies taken immediately pre- and post-exercise. Subjects reached 95% VO2 max in approximately 9 to 12 m...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080777 | MassIVE

Comparison of chiropractic student lexicon at two educational institutions: a cross-sectional survey.

Not available

S-EPMC6493211 | biostudies-literature

The future of cancer immunotherapy for brain tumors: a collaborative workshop.

Not available

S-EPMC9125824 | biostudies-literature

Phytochemical analysis, radical scavenging and glioblastoma U87 cells toxicity studies of stem bark of buckthorn (Rhamnus pentapomica R. Parker).

Not available

S-EPMC10759440 | biostudies-literature