Paterson D D - OmicsDI

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Unknown (900)
Transcriptomics (19)
Proteomics (19)
Genomics (2)
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Organisms

Homo sapiens (14)
Mus musculus (7)
Escherichia coli (3)
Drosophila melanogaster (2)
Klebsiella pneumoniae (2)
Klebsiella variicola (2)
Rattus norvegicus (2)
Staphylococcus aureus (2)
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Brassica oleracea (1)
Daphnia pulex (1)
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Organisms

Gossypium raimondii (1)

Repository

biostudies-arrayexpress (19)
pride (19)
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Tissue

Cell culture (9)
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Disease

Breast cancer (2)
Normal (1)
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Technology Type

Mass Spectrometry (19)
Shotgun proteomics (12)
SWATH MS (5)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (2)
Zymo Research (1)
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Publication Date

2021 (12)
2011 (5)
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CHEBI ID

CHEBI:10072 (1)
CHEBI:10362 (1)
CHEBI:10642 (1)
CHEBI:111517 (1)
CHEBI:131388 (1)
CHEBI:131434 (1)
CHEBI:131454 (1)
CHEBI:131623 (1)
CHEBI:132188 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:132994 (1)
CHEBI:133001 (1)
CHEBI:133026 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133046 (1)
CHEBI:133057 (1)
CHEBI:133066 (1)
CHEBI:133077 (1)
CHEBI:133089 (1)
CHEBI:133092 (1)
CHEBI:133096 (1)
CHEBI:133112 (1)
CHEBI:133115 (1)
CHEBI:133119 (1)
CHEBI:133139 (1)

Metabolite Name

(R)-salsolinol (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,3-propanediol (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-linoleoyl-GPE (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenine (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylhypoxanthine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)
1-palmitoyl-GPI* (16:0) (1)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (1)
10-hydroxystearate (1)
12,13-DiHOME (1)
12-dehydrocholate (1)
12-ketolithocholate (1)
16a-hydroxy DHEA 3-sulfate (1)

First Public Date

2019 (1)

Study type

Transcription profiling by array (13)
CLIP-seq (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)
RNA-seq of coding RNA (1)

Release Date

2023 (98)
2021 (90)
2022 (84)
2025 (64)
2020 (64)
2024 (63)
2015 (49)
2016 (49)
2018 (46)
2011 (43)
2017 (43)
2019 (41)
2014 (40)
2012 (34)
2013 (30)
2010 (22)
2009 (21)
2008 (12)
2026 (10)
2006 (5)
2007 (3)
2005 (2)
2001 (2)
2000 (2)
2004 (1)
1999 (1)

Lab affiliation

Bioplatforms Australia (7)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Associate Professor Department of Physiology Medical College of Wisconsin (1)
Bioplatforms Australia (project manager) (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CRUK Beatson Institute (1)
Department of Anatomy and Developmental BiologyMonash University, Clayton, Victoria, Australia; Development and Stem Cells Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia. Alexander N Combes alex.combes@monash.edu. David J Nikolic-Paterson david.nikolic-paterson@monash.edu. (1)
Departmento de Bioquíimica y Biologíia Molecular, Universitat de Valèencia, Burjassot, Valencia, Spain (1)
Harvard Medical School, Boston, USA Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain (1)
Molecular Neuroendocrinology group, Bristol Medical school, University of Bristol (1)
PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Proteomics & Metabolomics Facility MRC London Institute of Medical Sciences, Du Cane Road, London W12 0NN, United Kingdom (1)
The University of Queensland, Centre for Clinical Research, Faculty of Medicine. (1)

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Identification of direct transcriptional targets of V600EBRAF/MEK in melanoma

A375P melanoma cells were treated with 1uM of the MEK inhibitor PD184352 or 0.4uM of the V600EBRAF inhibitor PLX4720 for 2hr, 6hr and 24hrs. DMSO treatment for 2hr, 6hr and 24hrs serves as the negative control Triplicate experiments were performed for DMSO, PD184352 and PLX4720 treatment at 3 timepo...

ORGANISM(S): Homo sapiens

2010-08-18 | E-GEOD-17089 | biostudies-arrayexpress

Understanding Neighborhoods' Impact on Youth Substance Use and Mental Health Outcomes in Paterson, New Jersey: Protocol for a Community-Based Participatory Research Study.

Not available

S-EPMC8196357 | biostudies-literature

Expression of Cathepsins B, D, and G in Extracranial Arterio-Venous Malformation.

Not available

S-EPMC8367294 | biostudies-literature

Characterization of a naturally occurring class D beta-lactamase from Achromobacter xylosoxidans.

Not available

S-EPMC2415784 | biostudies-literature

Early High-Dose Vitamin D₃ for Critically Ill, Vitamin D-Deficient Patients.

Not available

S-EPMC7306117 | biostudies-literature

Cathepsins B, D, and G Are Expressed in Metastatic Head and Neck Cutaneous Squamous Cell Carcinoma.

Not available

S-EPMC8491843 | biostudies-literature

Intestinal label-retaining cells are secretory precursors expressing Lgr5

The epithelial lining of the small intestine is continuously renewed from a small number of stem cells including Lgr5 expressing crypt base cells that have been shown to be a rapidly cycling stem cell population in homeostasis. Alternative markers of intestinal stem cells have variously identified p...

ORGANISM(S): Mus musculus

2013-02-27 | E-GEOD-43772 | biostudies-arrayexpress

A whole-genome DNA marker map for cotton based on the D-genome sequence of Gossypium raimondii L.

Not available

S-EPMC3789800 | biostudies-literature

Variants in the vitamin D pathway, serum levels of vitamin D, and estrogen receptor negative breast cancer among African-American women: a case-control study.

Not available

S-EPMC3446393 | biostudies-literature

Biodiversity data and new species descriptions of polychaetes from offshore waters of the Falkland Islands, an area undergoing hydrocarbon exploration.

Not available

S-EPMC7286948 | biostudies-literature