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Methylation profiling[E-TABM-482] DNA methylome of human spermatozoa
Genome-wide DNA methylation profile of human spermatozoa using the meDIP technique and massively parallel sequencing. DNA methylation is an indispensible epigenetic modification required for regulating the expression of mammalian genomes. Immunoprecipitation-based methods for DNA methylome analysis ...
ORGANISM(S): Homo sapiens 
2011-02-05 | GSE25686 | GEO
GenomicsHomo sapiens
[E-TABM-482] DNA methylome of human spermatozoa
PRJNA135835 | ENA
ProteomicsExtracellular vesicles (EV) from IFNγ-primed cardiosphere-derived cells (CDCs)
Characterization of proteins in extracellular vesicles (EV) from cardiosphere-derived cells (CDCs) of a clinically relevant pig model. Additionally, considering that priming stem cells with inflammatory stimuli may increase the therapeutic potential of released vesicles, here we studied the dynamic ...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2020-05-15 | PXD016434 | Pride
Ev Cdcs Ifnγ Pig Lc-ms/ms 
TranscriptomicsCharacterisation of two in vivo expressed methyltransferases of the Mycobacterium tuberculosis complex: antigenicity and genetic regulation
Genome sequencing of Mycobacterium tuberculosis complex members has accelerated the search for new disease control tools. Antigen mining is one area that has benefited enormously from access to genome data. Here genes that were identified by transcriptome analysis as upregulated in response to an in...
ORGANISM(S): Mycobacterium tuberculosis 
2008-01-09 | E-BUGS-59 | biostudies-arrayexpress
GenomicsDNA methylome of human spermatozoa
Genome-wide DNA methylation profile of human spermatozoa using the meDIP technique and massively parallel sequencing
ORGANISM(S): Homo sapiens 
2008-05-31 | E-TABM-482 | biostudies-arrayexpress
GenomicsOpisthorchis viverrini
Opisthorchis viverrini Raw sequence reads
PRJNA392273 | ENA
TranscriptomicsTranscription profiling of Drosophila exposed to a levitation magnet for different lengths of time
Drosophila samples were exposed to the levitation magnet inside a 25mm diameter tubes with 3 ml of yeast-based Drosophila food in the bottom and a chamber of only 5 mm of height over the food. This small region is needed in order to guarantee that all the flies were located in the effective g area s...
ORGANISM(S): Drosophila melanogaster 
2010-07-01 | E-MEXP-2082 | biostudies-arrayexpress
TranscriptomicsEvaluation of technical (array-to-array) reproducibility of L. vannamei microarray
Five aliquots of the same RNA sample were labeled and hybridized in parallel to the L. vannamei microarray, in order to assess the technical reproducibility of the tool Keywords: technical validation A sample of gill total RNA was divided in 5 identical aliquots, and each aliquot was labeled and hyb...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4954 | biostudies-arrayexpress
TranscriptomicsProfiling of WSSV infection in hepatopancreas of shrimp
Profiles of gene expression in hepatopancreas isolated from shrimp experimentally infected with White Spot Syndrome Virus were compared to those of un-infected controls Keywords: response to viral disease Two groups of eight shrimp were compared in terms of hepatopancreas gene expression, 40 hours a...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4955 | biostudies-arrayexpress
TranscriptomicsTissue-specific expression profiles in L. vannamei
RNA from different tissues of Litopenaeus vannamei was used to test the ability of the microarray to discriminate tissue-specific gene expression profiles Keywords: validation, tissue comparison RNA from circulating hemocytes, gills, hepatopancreas, or muscle (3 biological replicates each) was hybri...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4949 | biostudies-arrayexpress
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