Pcp - OmicsDI

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Unknown (1965)
Transcriptomics (452)
Genomics (151)
Proteomics (71)
Metabolomics (17)
Clinical (7)
Other (5)
Models (4)
Genomic (1)

Organisms

Homo sapiens (290)
Mus musculus (101)
Rattus norvegicus (19)
Saccharomyces cerevisiae (8)
Drosophila melanogaster (7)
Bos taurus (6)
Danio rerio (5)
Arabidopsis thaliana (4)
Oncorhynchus mykiss (4)
Rhodospirillum rubrum (3)
Equus caballus (3)
Macaca mulatta (2)
Trypanosoma brucei brucei (2)
Macaca fascicularis (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Pseudomonas aeruginosa (2)
Sphingobium chlorophenolicum L-1 (2)
Aspergillus niger (2)
Streptococcus pyogenes (2)
Desmodus rotundus (1)
Pinus sylvestris (1)
Ciona intestinalis (1)
Pan troglodytes (1)
Phaeodactylum tricornutum (1)
synthetic construct (1)
Populus trichocarpa (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Sus scrofa (1)

Organisms

Mus musculus (27)
Homo sapiens (19)
soil metagenome (6)
Drosophila melanogaster (5)
Sphingobium chlorophenolicum L-1 (2)
Ectopseudomonas mendocina (2)
Aspergillus niger (2)
Danio rerio (2)
Streptococcus pyogenes (2)
Saccharomyces cerevisiae (2)
Nocardioides sp. PD653 (1)
Nocardioides sp. PD653-B2 (1)
Desulfitobacterium hafniense PCP-1 (1)
Desulfitibacter (1)
Sphingobium chlorophenolicum (1)
Bacillus subtilis Hal1 (1)
Brucella anthropi 60a (1)
Folsomia candida (1)
Pneumocystis jirovecii (1)
Bacillus tropicus (1)
Oryctolagus cuniculus (1)
Xenopus laevis (1)
synthetic construct (1)
Pseudomonas aeruginosa (1)
Oncorhynchus mykiss (1)
biofilm metagenome (1)
Solanum lycopersicum (1)
fish gut metagenome (1)
bioreactor metagenome (1)

Repository

biostudies-arrayexpress (407)
ENA (133)
geo (60)
pride (48)
MassIVE (16)
MetaboLights (14)
EGA (8)
jPOST (5)
BioModels (2)
FAIRDOMHub (2)
GNPS (2)
iProX (2)
dbGaP (1)
MetabolomicsWorkbench (1)

Tissue

Plant cell (8)
Cell culture (8)
Brain (6)
Root (5)
Lung (3)
Liver (3)
Heart (2)
Embryo (2)
Thymus (2)
Permanent cell line cell (2)
Kidney (2)
Breast cancer cells (1)
Extracellular matrix secreting cell (1)
Shoot tip (1)
MDCK cell (1)
Tissue development (1)
Aleurone layer (1)
Pituitary gland (1)
White fat cell differentiation (1)
Fiber (1)
Fat cell (1)
Endosperm (1)
Tuber (1)
Preadipocyte (1)
Subcutaneous adipose tissue (1)
Mycelium (1)
White adipose tissue (1)
Tissue (1)
Seedling (1)
Stem (1)

Disease

Colorectal Neoplasms (6)
Chronic lymphocytic leukemia (2)
Normal (2)
Craniopharyngioma (2)
Schizophrenia (2)
Prostate carcinoma lymph node metastasis (1)
Untreated prostate cancer (1)
Lung large cell carcinoma (1)
Cancer (1)
Prostate carcinoma (1)
Ewing's sarcoma (1)
Head and Neck Neoplasms (1)
Cancer (1)
Hepatic steatosis (1)
Prostate adenocarcinoma (1)
Type 2 diabetes mellitus (1)
Breast cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (25)
Bottom-up proteomics (11)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (5)
Data-independent acquisition (4)
Top-down proteomics (4)
Mass spectrometry assay (3)
SWATH MS (3)
Gel-based experiment (2)
Illumina Genome Analyzer II (1)
NMR spectroscopy (1)
ESI (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

Agilent Microarray Scanner G2505C (4)
Agilent Hybridisation Oven G2545A (4)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
Tabletop microfuge, Nanodrop (2)
Tabletop centrifuge (2)
PC (2)
None (2)
454 GS FLX+ (2)
Illumina HiSeq 1000 (2)
NextSeq 550 (2)
Agilent 7890A GC coupled to a 5975C inert XL MSD (2)
Chromium Controller (10X Genomics) (1)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
Affymetrix GeneAtlas (1)
Agilent Bioanalyzer (1)
Not applicable (1)
Agilent Microarray scanner (G2505C) (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Affymetrix Gene-Chip Scanner-3000-7G (1)
Genechip Hybridization Oven-645 (Affymetrix); Geneechip Fluidics Station-450 (Affymetrix) (1)
Maxwell 16 Instrument (Cat. #AS2000, Promega, Madison, WI) (1)
ScanArray [PerkinElmer] (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)

Publication Date

2013 (81)
2014 (75)
2010 (47)
2015 (43)
2012 (43)
2016 (36)
2011 (32)
2025 (27)
2021 (26)
2024 (19)
2026 (18)
2023 (17)
2022 (17)
2018 (14)
2008 (13)
2020 (12)
2019 (10)
2017 (9)
2009 (8)
2005 (4)
2007 (3)
2006 (2)

CHEBI ID

CHEBI:24266 (4)
CHEBI:15428 (4)
CHEBI:16449 (4)
CHEBI:17822 (4)
CHEBI:22653 (4)
CHEBI:16811 (4)
CHEBI:26271 (4)
CHEBI:18237 (4)
CHEBI:25094 (4)
CHEBI:28044 (4)
CHEBI:78320 (4)
CHEBI:18075 (3)
CHEBI:16765 (3)
CHEBI:17992 (3)
CHEBI:88003 (3)
CHEBI:28790 (3)
CHEBI:16610 (3)
CHEBI:16010 (3)
CHEBI:26984 (3)
CHEBI:33508 (3)
CHEBI:26078 (3)
CHEBI:17148 (3)
CHEBI:24298 (3)
CHEBI:18012 (3)
CHEBI:15356 (3)
CHEBI:30769 (3)
CHEBI:15676 (3)
CHEBI:15756 (3)
CHEBI:17677 (3)
CHEBI:17239 (3)

Metabolite Name

Inosine (3)
DTDP (2)
Phosphatidylethanolamine (2)
Triterpenoids (2)
Sclareol (2)
Allantoin (2)
Methionine (2)
Pyruvate (2)
Lysine (2)
Lactate (2)
Guanosine (2)
Glycine (2)
Glutamate (2)
Glucose (2)
Alanine (2)
Proline (2)
Adenosine (2)
Cyanidin conjugate (A9) (1)
Cyanidin conjugate (A5) (1)
Quercetin-3-Glu (1)
Isorhamnetin-3-Glu-7-Rha (1)
Quercetin-3,7-O-a-L-dirhamnopyranoside (1)
Kaempferol-3-O-b-glucopyranosyl-7-O-a-rhamnopyranoside (1)
Cyanidin conjugate (A11) (1)
Kaempferol-diHex-Rha (1)
Quercetin-3-O-b-glucopyranosyl-7-O-a-rhamnopyranoside (1)
Cyanidin conjugate (A10) (1)
Quercetin-Hex-diRha (1)
Kaempferol-3-Rha-7-Glu (1)
Quercetin-diHex-Rha (1)

First Public Date

2024 (18)
2025 (16)
2026 (14)
2022 (13)
2023 (12)
2014 (11)
2018 (9)
2017 (8)
2016 (8)
2013 (7)
2019 (6)
2020 (4)
2015 (4)
2021 (3)

Modelling Approach

Partial differential equation model (2)

Study status

Completed (4)
Not provided (2)
Recruiting (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (2)
C. R., Genetics and Physiology of Microalgae, InBios/Phytosystems research unit, University of Liège, 4000 Liège, Belgium Telephone +3243663812 (1)
Professor, Department of Botany and Plant Pathology, Purdue University (1)
LIST-ERIN-ERTP (1)
Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, Sichuan, China (1)
Institut de Biologie Intégrative et des Systèmes, Département de Biologie, Université Laval, Québec, Canada (1)
Instituto de Bioquimica Vegetal y Fotosintesis CSIC Americo Vespucio 49. 41092. Seville (Spain). (1)
Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907 Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907 Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907 (1)
Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Respiratory and Critical Care Medicine, Beijing Institute of Respiratory Medicine and Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China (1)
Centre for High-throughput Biology, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 (1)
Michael Smith Laboratory, University of British Columbia, Vancouver, British Columbia,Canada, V6T 1Z4 ( lab head ) (1)
Dep. of Dermatology, Medical Center and Center for Biological Systems Analysis, University of Freiburg, Germany (1)
(Monash University). Y. T. Candace Ho: yee.ho@monash.edu (Monash University) (1)
Department of Molecular Systems Biology, Cell Science Research Center, Royan Institute for Stem Cell Biology and Technology, ACECR, Tehran, Iran (1)
Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research (1)
School of Life Sciences, University of Warwick, Coventry, United Kingdom (1)
CRCM, Cell Polarity, Cell signalling and Cancer “Equipe labellisée Ligue Contre le Cancer”, Inserm,U1068, Marseille, F-13009, France Institut Paoli-Calmettes, Marseille, F-13009, France Aix-Marseille Université, F-13284, Marseille, France CNRS, UMR7258 (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver BC, Canada (1)
University of Geneva (1)
Michigan State University, Biochemical & Molecular Biology Department and Plant Resilience Institute (1)
Department of Biochemistry, Molecular Plant Biology, Tykistökatu 6 A , Turku 20520, Finland (1)
Associate professor II Department of Biology Faculty of Natural Sciences marianne.nymark@ntnu.no +4741528304 Realfagbygget, DU1-119, Gløshaugen, Høgskoleringen 5 Trondheim 7030 Norway (1)
Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes Marseille Proteomic 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)
Biochemistry and Molecular Biology, University of British Columbia, Canada (1)
Proteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)

Keyword

Screening (2)
Primary care oncology (1)
Web site (1)
Provincial health contact center (1)
Colon Cancer Screening (1)
Patient Selection (1)
Patient Participation (1)
Physicians, Primary Care (1)
Conscious Sedation (1)
Fecal occult blood test (1)
Randomized control trial (1)
Rectal (1)
Early Detection of Cancer (1)
Colonoscopy (1)
Colon (1)

IsPrivate

False (2)

Classification

fungi (3)
bacteria (3)

Study type

Transcription profiling by array (322)
MicroRNA profiling by array (24)
RNA-seq of coding RNA (15)
ChIP-chip by tiling array (7)
Interventional (7)
Other (6)
ChIP-chip by array (4)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
RNA-seq of non coding RNA (3)
Human - One-color microarray (2)
Transcription profiling by tiling array (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (205)
2025 (196)
2021 (196)
2024 (191)
2023 (190)
2020 (149)
2014 (144)
2019 (128)
2013 (127)
2016 (123)
2018 (117)
2017 (114)
2015 (107)
2012 (81)
2011 (75)
2010 (74)
2009 (36)
2008 (36)
2026 (29)
2007 (15)
2006 (8)
2005 (8)
2004 (6)
2002 (5)
2003 (4)
2000 (4)
2001 (2)
1999 (1)
1998 (1)

Location

United States (3)
Switzerland (2)
Canada (1)

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PICU mngs PCP

PRJEB59277 | ENA

Desulfitobacterium hafniense PCP-1

Desulfitobacterium hafniense PCP-1 Genome sequencing and assembly

PRJNA165259 | ENA

PCP degradation under different electron acceptors

PCP degradation under different electron acceptors Metagenome

PRJNA411964 | ENA

Transcription profiling of Pseudomonas aeruginosa after PCP shock

Through chemical contamination of natural environments, microbial communities are exposed to many different types of chemical stressors; however, research on whole genome responses to this contaminant stress is limited. This study examined the transcriptome response of a common soil bacterium, Pseu...

ORGANISM(S): Pseudomonas aeruginosa

2008-06-13 | E-GEOD-5604 | biostudies-arrayexpress

PCP

PRJNA1149207 | ENA

PCP remediation bioreactors

PCP remediation bioreactors Raw sequence reads

PRJNA475524 | ENA

PCP shock of P. aeruginosa

ORGANISM(S): Pseudomonas aeruginosa

2006-09-08 | GSE5604 | GEO

The characteristic of cholesterol metabolism-related gene expression in ACP, PCP and PA

PRJNA900213 | ENA

LSD1 complexes - Assembly of methylated KDM1A and CHD1 drives androgen receptor-dependent transcription and translocation

PCP-SILAC analysis of LSD1 protein complexes isolated from LNCaP cells

ORGANISM(S): Homo sapiens (Human)

2016-01-11 | PXD003262 | Pride

Experimental validation of a central carbon metabolic model in Aspergillus niger to enable metabolic engineering of a fungal cell factory

The influence of selected pentose catabolic pathway (PCP) deletion strains on growth of plant biomass and re-routing of sugar catabolism was addressed to gain a better understanding of the flexibility of the fungus Aspergillus niger in using plant biomass-derived monomers. The transcriptome, metabol...

ORGANISM(S): Aspergillus Niger (ncbitaxon:5061)

2020-12-17 | MSV000086614 | MassIVE

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2673 Results

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