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GenomicsThe Danish Reference Genome - GenomeDenmark data access committee
Data Access Committee EGAC00001000562
EGAC00001000562 | EGA
TranscriptomicsTET2 loss-of-function mutations associate with a DNA hypermethylation signature in diffuse large B-cell lymphoma (DNA methylation)
Genome wide DNA methylation profiling of patient samples with TET2 mutations and Wild type TET2 status . The Illumina Infinium HumanMethylation 450_15017482_v.1.1 was used to obtain DNA methylation profiles across approximately 482,421 CpGs in fresh frozen lymphoma samples. Samples include 19 TET2...
ORGANISM(S): Homo sapiens 
2013-10-10 | E-GEOD-37362 | biostudies-arrayexpress
TranscriptomicsHuman skeletal muscle biopsies from a 3h IL-6 infusion
Skeletal muscle has been identified as a secretory organ. We hypothesized that IL-6, a cytokine secreted from skeletal muscle during exercise, could induce production of other secreted factors in skeletal muscle. Keywords: Human skeletal muscle time course response to IL-6 infusion IL-6 was infused...
ORGANISM(S): Homo sapiens 
2008-05-27 | E-GEOD-10685 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of TET2 wild type and TET2 mutant patients with diffuse large B-cell derived lymphoma
Global gene expression in TET2 mutant and Wild type patients. We performed an integrated analysis of global DNA methylation and gene expression data to investigate the effects of DNA hypermethylation on gene expression. Total RNA was isolated from 4 TET2mut and 5 TET2wt were isolated using standard...
ORGANISM(S): Homo sapiens 
2013-10-10 | E-GEOD-37363 | biostudies-arrayexpress
ProteomicsProteome-wide identification of SUMO2 modification sites
Posttranslational modification with small ubiquitin-like modifiers (SUMOs) alters the function of proteins involved in diverse cellular processes. SUMOs are conjugated to lysine residues in target proteins by SUMO-specific enzymes. Although proteomic studies have identified hundreds of sumoylated su...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080741 | MassIVE
TranscriptomicsSNHG5 siRNA knock down in HCT116 cells
SnoRNA host gene 5 was knocked down with two different siRNAs and profiled for gene expression. three replicates of two different siRNAs against SNHG5 and a control siRNA
ORGANISM(S): Homo sapiens 
2016-04-01 | E-GEOD-76801 | biostudies-arrayexpress
TranscriptomicsTissue specific expression of non-coding RNAs
Thousands of novel non-coding RNAs (ncRNA) has been identified in recent years. Only few have been functionally characterized and it is thus unclear which and how many are functional. Here, we characterize expression of ncRNAs in twelve human tissues using a costum designed microarray. The study ser...
ORGANISM(S): Homo sapiens 
2013-06-01 | E-GEOD-41947 | biostudies-arrayexpress
TranscriptomicsNon-coding RNA expression in colorectal cancer
Expression was measured in 113 colorectal cancer samples using a costumized array. Expression was measured in 113 human colorectal cancer samples using a custom-designed array containing 26,910 non-coding RNA features and a set of 6,856 protein-coding genes.
ORGANISM(S): Homo sapiens 
2016-01-12 | E-GEOD-76713 | biostudies-arrayexpress
Genomicsena-DATASET-DTU-19-07-2017-19:09:46:884-206 - samples
The MHC vcf call set was generated using a modified AsmVar and BayesTyper pipeline. In contrast to the original pipeline, where variant calling is performed using alignment of collapsed assemblies to a reference genome, the MHC call set was produced using alignment of phased MHC haplotypes. Two iter...
EGAD00001003455 | EGA
TranscriptomicsTrained and untrained human skeletal muscle single-nucleus RNA-sequencing from individuals with type 2 diabetes and control
Single-nuclei RNA sequencing (snRNA-seq) data of human muscle cells. The samples are a part of a study investigating the effect of one-legged high-intensity interval training (HIIT) on the nuclear transcriptional response in skeletal muscle. The HIIT was done on one leg on a cycle ergometer, and vas...
ORGANISM(S): Homo sapiens 
2025-04-24 | E-MTAB-15009 | biostudies-arrayexpress
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