Pediatric tumors

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Unknown (5169)
Genomics (1362)
Transcriptomics (987)
Methylation profiling (67)
Proteomics (49)
Other (30)
Genomic (16)
Metabolomics (11)
Clinical (6)

Organisms

Homo sapiens (1387)
Mus musculus (241)
Andropogon gerardi (30)
Bacteria (30)
Botrytis cinerea (30)
Canis lupus familiaris (30)
Clostridium perfringens (30)
Cnidaria (30)
Cricetulus griseus (30)
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Fasciola (30)
Hepatitis B virus (30)
Human betaherpesvirus 5 (30)
Canis lupus familiaris (12)
Danio rerio (7)
Rattus norvegicus (3)
Drosophila melanogaster (3)
Schizosaccharomyces pombe (3)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
Gallus gallus (2)
Haemophilus influenzae R2866 (1)
Viruses (1)
Yersinia enterocolitica (1)
Helicobacter pylori (1)
Oncorhynchus mykiss (1)
Ovis aries (1)
Caenorhabditis elegans (1)
synthetic construct (1)
Mus (1)

Organisms

Homo sapiens (590)
Mus musculus (108)
Danio rerio (6)
Canis lupus familiaris (5)
Schizosaccharomyces pombe (3)
Drosophila melanogaster (2)
Homo sapiens/Mus musculus xenograft (1)
Mus (1)

Repository

ENA (790)
biostudies-arrayexpress (723)
geo (489)
EGA (444)
pride (30)
dbGaP (16)
MassIVE (14)
MetaboLights (11)
iProX (2)
jPOST (2)
ExpressionAtlas (1)
GPMDB (1)

Tissue

Brain (11)
Cell culture (7)
Permanent cell line cell (3)
Epithelial cell (2)
Astrocyte (1)
Cerebellum (1)
Cerebrospinal fluid (1)
Choroid plexus cancer cell (1)
Choroid plexus epithelium (1)
Choroid plexus papilloma cell (1)
Endothelial cell (1)
Ewing's sarcoma cell (1)
Kidney (1)
Monocyte (1)
Precursor cell (1)
Stem cell (1)
Whole body (1)

Disease

Normal (5)
Medulloblastoma (4)
Neuroblastoma (4)
Glioblastoma (2)
Alveolar rhabdomyosarcoma (2)
Atypical teratoid / rhabdoid tumor (1)
Normal frontal (1)
Normal cerebellum (1)
Medulloblastoma, large-cell (1)
Primitive neuroectodermal tumor (1)
Fibrosarcoma (1)
Hepatitis C virus-induced hepatocellular carcinoma (1)
Acute lymphocytic leukemia (1)
Breast Normal (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Ependymoma (1)
Primary medulloblastoma (1)
Down syndrome, acute megakaryoblastic leukaemia (1)
Invasive Ductal Carcinoma (1)
Neuroblastoma-undifferentiated (1)
Hepatoblastoma (1)
Follicular lymphoma (1)
Bladder tumour (1)
Cancer cell line pool (1)
WT (1)
Leukemia (1)
Small cell lung carcinoma (1)
Cervical carcinoma (1)
Burkitt lymphoma (1)
Sarcoma (1)

Technology Type

Mass Spectrometry (30)
Illumina HiSeq 2000 (18)
Shotgun proteomics (16)
Mass spectrometry (8)
Bottom-up proteomics (8)
Data-dependent acquisition (5)
ILLUMINA, Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000, ILLUMINA (3)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Gel-based experiment (2)
Genome-Wide Human SNP Array 6.0 - Thermo Fisher Scientific (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiScanSQ, ILLUMINA (1)
ABI_SOLID, AB 5500xl Genetic Analyzer, AB SOLiD 4 System (1)
NextSeq 500, Illumina HiScanSQ (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Complete Genomics (1)
ILLUMINA, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Data-independent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
NextSeq 500 (7)
Illumina HiSeq 2500 (5)
2100 Bioanalyzer Agilent (3)
10x Genomics Chromium Controller (3)
Intel Core 2 Duo E8500 3.16 GHz or equivalent (2)
HiSeq X Ten (2)
NextSeq 550 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Thermal cycler, Magnetic stand / beads, Pipettes and tips, Microcentrifuge tubes, Plate shaker (1)
Centrifuge, Pipettes and tips, Agilent 2100 Bioanalyzer, NanoDrop spectrophotometer, Vortex mixer (1)
Liquid nitrogen, -80°C freezer, Surgical tools (scalpels, forceps), Sample tubes / cryovials (1)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
Sony SH8000S Cell Sorter (1)
Covaris S2 (1)
Scanning of was performed on an Axon 4000B scanner (1)
None (1)
Affymetrix Gene Titan (1)
Illumina iScan (1)
Gene Titan (1)
GeneChip Scanner 3000 7G (1)
ScanArray [PerkinElmer] (1)
Axon- GenePix4000B (1)
NextSeq 2000 (1)
DNBSEQ-T7 (1)
Illumina NextSeq 2000 (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2013 (113)
2012 (107)
2026 (105)
2014 (105)
2010 (94)
2015 (92)
2025 (73)
2024 (67)
2023 (64)
2011 (58)
2022 (55)
2008 (54)
2016 (53)
2009 (43)
2021 (37)
2020 (33)
2019 (31)
2017 (24)
2018 (21)
2005 (16)
2007 (13)
2006 (9)
2004 (3)

CHEBI ID

CHEBI:22653 (3)
CHEBI:28300 (3)
CHEBI:25017 (3)
CHEBI:6650 (3)
CHEBI:32816 (3)
CHEBI:33568 (2)
CHEBI:143243 (2)
CHEBI:17768 (2)
CHEBI:14321 (2)
CHEBI:37154 (2)
CHEBI:35391 (2)
CHEBI:30916 (2)
CHEBI:70959 (2)
CHEBI:70958 (2)
CHEBI:64575 (2)
CHEBI:64566 (2)
CHEBI:64561 (2)
CHEBI:17172 (2)
CHEBI:17285 (2)
CHEBI:60175 (2)
CHEBI:15713 (2)
CHEBI:17659 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:49033 (2)
CHEBI:25094 (2)
CHEBI:17202 (2)
CHEBI:17230 (2)
CHEBI:16344 (2)
CHEBI:17239 (2)

Metabolite Name

Tauroursodeoxycholic acid (3)
Isocitric acid (3)
3-Methoxy-4-hydroxyphenylglycolaldehyde (2)
Chrysophanol (2)
N-formylmethionine (2)
N-Acetyl-D-glucosamine (2)
Maleamic acid (2)
Oxoglutaric acid (2)
2-Oxovaleric acid (2)
Cysteineglutathione disulfide (2)
Cholesterol sulfate (2)
Pyrrole-2-carboxylic acid (2)
Norepinephrine (2)
Threonic acid (2)
Picolinic acid (2)
Pentadecanoic acid (2)
Methylsuccinic acid (2)
3-Hydroxyisovaleric acid (2)
Glycolic acid (2)
Uracil (2)
Ursodeoxycholic acid (2)
Hydroxyphenyllactic acid (2)
Gingerol (2)
Deoxyuridine (2)
Acetic acid (2)
N-Acetylmuramate (2)
Ornithine (2)
Benzoic acid (2)
Allantoin (2)
Taurine (2)

First Public Date

2026 (97)
2025 (92)
2023 (91)
2022 (91)
2024 (90)
2014 (87)
2020 (44)
2019 (37)
2021 (36)
2018 (32)
2017 (32)
2015 (28)
2013 (24)
2016 (9)

Study status

Completed (3)
Recruiting (2)
Active, not recruiting (1)

Study type

Transcription profiling by array (434)
Comparative genomic hybridization by array (71)
RNA-seq of coding RNA (60)
Methylation profiling by array (33)
Unknown experiment type (27)
ChIP-seq (18)
Genotyping by array (15)
Methylation profiling by high throughput sequencing (13)
Other (8)
DNA-seq (8)
MicroRNA profiling by array (7)
RNA-seq of coding RNA from single cells (7)
RNA-seq of non coding RNA (5)
Animal - One-color microarray (3)
Observational (3)
Interventional (3)
ChIP-chip by tiling array (2)
RNA-seq of total RNA (2)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
ATAC-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (656)
2023 (584)
2021 (563)
2025 (520)
2020 (464)
2024 (422)
2019 (347)
2015 (280)
2018 (278)
2017 (263)
2016 (263)
2014 (234)
2013 (225)
2012 (188)
2010 (145)
2011 (121)
2026 (91)
2009 (83)
2008 (79)
2007 (23)
2005 (20)
2006 (19)
2004 (9)
2003 (5)
2001 (5)
2002 (3)
2000 (2)

Lab affiliation

Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Attending Physician Medical Director, Brain Tumor Institute Principal Investigator, Center for Cancer and Immunology Research, Children Research Institute Associate Professor of Pediatrics - The George Washington University School of Medicine and Health Sciences Executive co-Chair, Childrens Brain Tumor Network www.CBTN.org (1)
Baylor College of Medicine Houston, Texas (1)
Cancer proteomics lab Department of Molecular Cell Biology Weizmann Institute of Science (1)
Dana-Farber Cancer Institute 450 Brookline Avenue, Longwood Center 3217 Boston, MA 02215 (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Pathology, University of British Columbia, Vancouver, BC, Canada (1)
Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA (1)
Department of Pediatric Oncology, Hematology and Clinical Immunology, Medical Faculty, University Hospital Düsseldorf, Düsseldorf, Germany (1)
Division of Pediatric Hematology and Oncology, Department of Pediatrics, Inselspital, Bern University Hospital, University of Bern, Switzerland (1)
Division of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany & Hopp Children’s Cancer Center at the NCT Heidelberg (KiTZ), 69120 Heidelberg, Germany (1)
Division of Pediatric Oncology, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, MD. (1)
Epigenetics and Cell Fate Centre CNRS UMR7216 – Université Paris Cité Lamarck B building, 4th floor, room 413 35, rue Hélène Brion 75205 Paris Cedex 13 +33157278981 (1)
German Cancer Research Center, Division of Cancer Epigenomics (1)
Indiana University School of Medicine, Dept of Pediatrics; Herman B Wells Center for Pediatric Research (1)
Institute for Molecular Medicine I, Medical Faculty, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, 40225 Duesseldorf, Germany (1)
Ist. G. Gaslini (1)
Istituto G. Gaslini (1)
Jack Cole Chair in Pediatric Hematology/Oncology Professor, Department of Pediatrics McGill University (1)
Janusz Rak MD, PhD Jack Cole Chair in Pediatric Hematology/Oncology Professor, Department of Pediatrics McGill University The Research Institute of the McGill University Health Centre Montreal Children's Hospital 1001 Decarie Blvd, Office # E M1 2244 Montreal, Quebec, H4A 3J1 Phone: (514) 412-4400 ext-office: 76240; -lab: 76220; Fax (514) 412-4331 (1)
Mass Spectrometry and Proteomics facility (LSMP) Institut Curie PSL Research University FRANCE (1)
Pediatric Hematology-Oncology Research Laboratory, Woman-Mother-Child Department, Lausanne University Hospital and University of Lausanne, Switzerland. (1)
School of Biosciences University of Sheffield Sheffield, S10 2TN United Kingdom (1)
Section mass-spectrometry and proteomics Diagnostic Center, Research Campus N27 Room 00.008 Martinistr. 52 20246 Hamburg (1)
The University of Sydney (1)
Tumor Biology Research Program, Basic Research Unit, Research Department, Children's Cancer Hospital Egypt 57357 (1)
UT Southwestern Dallas, TX, USA (1)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (1)

Location

Germany (2)
Netherlands (2)
United States (2)
France (2)
Slovakia (1)
Jordan (1)
Norway (1)
Singapore (1)
Egypt (1)
India (1)
Portugal (1)
Mexico (1)
Chile (1)
Turkey (1)
Poland (1)
Czechia (1)
Argentina (1)
Italy (1)
Spain (1)
Belgium (1)
Brazil (1)
Hungary (1)
Canada (1)
United Kingdom (1)
Austria (1)
Japan (1)

Keyword

First-In-Class Investigational Agent (1)
Peri-Nucleolar Compartment (PNC) (1)
Effective therapies against metastasis (1)
Oral Administration (1)
Maximum Recommended Starting Dose (1)
SEER (1)
Gastrointestinal (1)
Malignant (1)
Pediatric (1)
Children and young adults with GIST (1)
Sunitinib malate (1)
Tumor response (1)
Overall survival (1)
Tumor KIT mutation status (1)
Sunitinib (1)
Pharmacokinetics (1)

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Gene exrpression profiling of childhood adrenocortical tumors

Pediatric adrenocortical tumors (ACT) are rare and often fatal malignancies; little is known regarding their etiology and biology. To provide additional insight into the nature of ACT, we determined the gene expression profiles of 24 pediatric tumors (five adenomas, 18 carcinomas, and one undetermin...

ORGANISM(S): Homo sapiens

2015-11-25 | E-GEOD-75415 | biostudies-arrayexpress

Array-based bioinformatic analysis on pediatric primary central nervous system germ cell tumors

This SuperSeries is composed of the following subset Series: GSE19347: microRNA expression data from pediatric primary intracranial germ cell tumor GSE19348: expression data from pediatric primary intracranial germ cell tumor GSE19349: Genotyping and analysis of chromosome copy number variation (CNV...

ORGANISM(S): Homo sapiens

2010-06-24 | E-GEOD-19350 | biostudies-arrayexpress

Transcription profiling by array of human tumor cells with stem-like properties isolated from pediatric brain tumors

Background
Primitive brain tumors are the first cause of cancer-related death in children. Tumor cells with stem-like properties (TSCs), thought to account for tumorigenesis and therapeutic resistance, have been isolated from high-grade gliomas in adults. Whether TSCs are a common component of pe...

ORGANISM(S): Homo sapiens

2011-09-07 | E-MEXP-2910 | biostudies-arrayexpress

Transcription profiling of human pediatric malignant germ cell tumors

To compare the transcriptome profiles of the two principal histological variants of malignant germ cell tumor that occur in childhood Experiment Overall Design: Here, we analyzed the global gene expression profiles of 27 pediatric MGCTs from the two principal histologies (18 yolk sac tumors [YSTs] a...

ORGANISM(S): Homo sapiens

2008-06-18 | E-GEOD-10615 | biostudies-arrayexpress

Comparative genomic hybridization by array of human tumor cells with stem-like properties isolated from pediatric brain tumors

ORGANISM(S): Homo sapiens

2011-09-07 | E-MEXP-2909 | biostudies-arrayexpress

Genotyping and analysis of chromosome copy number variation (CNV) from pediatric primary intracranial germ cell tumor

Intracranial pediatric germ cell tumors (GCTs) have different histological differentiations, prognosis and clinical behaviors. Prognosis of patients with germinoma and mature teratoma is good, while patients with other types of GCTs, termed as nongerminomatous malignant germ cell tumors (NGMGCTs), r...

ORGANISM(S): Homo sapiens

2010-06-24 | E-GEOD-19349 | biostudies-arrayexpress

MicroRNAs characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia

MicroRNAs (miRNAs) regulate activity of protein-coding genes including those involved in hematopoietic cancers. The goal of the current study was to explore which miRNAs are unique for seven different subtypes of pediatric acute lymphoblastic leukemia (ALL). Therefore, the expression levels of 397 m...

ORGANISM(S): Homo sapiens

2011-02-11 | E-GEOD-23024 | biostudies-arrayexpress

microRNA expression data from pediatric primary intracranial germ cell tumor

ORGANISM(S): Homo sapiens

2010-05-14 | E-GEOD-19347 | biostudies-arrayexpress

Expression data from human brain tumors and human normal brain

The characteristics of immune cells infiltrating pediatric brain tumors is largely unexplored. A better understanding of these characteristics will provide a foundation for development of immunotherapy for pediatric brain tumors. Gene expression profiles were used to identify immune marker gene that...

ORGANISM(S): Homo sapiens

2013-08-25 | E-GEOD-50161 | biostudies-arrayexpress

Proteomics profiling of pediatric choroid plexus tumors

Aggresome is a para nuclear inclusion body that functions as a storage compartment for misfolded proteins. Our previous work revealed the presence of aggresomes in pediatric choroid plexus tumors (CPT). CPTs are rare neoplasms comprised of three pathological subgroups; choroid plexus carcinoma (CPC)...

ORGANISM(S): Homo sapiens (Human)

2021-02-11 | PXD021076 | Pride

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