Peptide array - OmicsDI

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Transcriptomics (3657)
Unknown (1064)
Proteomics (525)
Genomics (294)
Metabolomics (12)
Methylation profiling (3)
Other (2)

Organisms

Homo sapiens (1284)
Mus musculus (710)
Drosophila melanogaster (501)
Rattus norvegicus (171)
Caenorhabditis elegans (148)
Arabidopsis thaliana (114)
Saccharomyces cerevisiae (107)
Schizosaccharomyces pombe (39)
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Escherichia coli (26)
Gallus gallus (24)
Zea mays (21)
Medicago truncatula (17)
Oryza sativa (17)
Candida albicans (16)
Staphylococcus aureus (16)
Danio rerio (15)
Oncorhynchus mykiss (13)
Oryza sativa Japonica Group (11)
Methanococcus maripaludis S2 (10)
Legionella pneumophila (10)
Streptococcus pneumoniae (10)
Macaca mulatta (10)
Anopheles gambiae (9)
Canis lupus familiaris (9)
Hordeum vulgare (8)
Triticum aestivum (8)
Pseudomonas aeruginosa (8)
Pseudomonas putida (7)

Organisms

Homo sapiens (53)
Mus musculus (33)
Methanococcus maripaludis S2 (10)
Saccharomyces cerevisiae (4)
Arabidopsis thaliana (4)
Drosophila melanogaster (3)
Cicer arietinum (2)
Pseudomonas [fluorescens] SBW25 (1)
Streptococcus sanguinis (1)
Streptomyces lividans (1)
Populus tremula x Populus alba (1)
Porphyromonas gingivalis (1)
Oncorhynchus mykiss (1)
Corynebacterium diphtheriae (1)
Streptococcus pneumoniae (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Brucella melitensis (1)
Carassius auratus (1)
Streptococcus suis (1)
Oryctolagus cuniculus (1)
Bacillus velezensis (1)
Gallus gallus (1)
Solanum lycopersicum (1)
Staphylococcus aureus (1)
Bos taurus (1)
Caenorhabditis elegans (1)
Lactiplantibacillus plantarum (1)
Sus scrofa (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (3821)
pride (414)
ENA (140)
geo (50)
MassIVE (25)
EGA (13)
jPOST (12)
MetaboLights (12)
PAXDB (11)
ExpressionAtlas (5)
PanoramaPublic (3)
EVA (1)
GPMDB (1)
iProX (1)
PeptideAtlas (1)

Tissue

Cell culture (87)
Brain (28)
Epithelial cell (25)
Kidney (14)
Liver (14)
Leaf (12)
Permanent cell line cell (11)
Plant cell (10)
Blood plasma (9)
Cell suspension culture (9)
Fibroblast (9)
Blood (8)
Heart (8)
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Embryonic stem cell (7)
Lung (7)
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T cell (6)
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Blood serum (5)
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Blood cell (4)
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Disease

Normal (23)
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Cancer (2)
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HIV-associated dementia (1)
Alpha-1 antitrypsin deficiency-related emphysema (1)
Mantle cell lymphoma (1)
Prostate carcinoma lymph node metastasis (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
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B-cell chronic lymphocytic leukemia (1)
Uninfected (1)
Rheumatoid Arthritis (1)
EAE-resistant (1)
Ischaemia reperfusion injury (1)
P. aeruginosa infected (1)
Chronic gastritis (1)
B. dendrobatidis infection (1)
Mild hyperglycemia, liver dysfunction, and renal glycosuria (1)
Uncomplicated gonorrhoea (1)
1dpi (1)
HHV-6B infected (1)
Xoo inoculated (1)
No tendon xanthomas (1)
Infected (1)
Chronic infection with geohelminth ascaris lumbricoides (1)
Infected with Drechmeria coniospora (1)

Technology Type

Mass Spectrometry (414)
Shotgun proteomics (233)
Bottom-up proteomics (87)
Data-dependent acquisition (51)
Affinity purification coupled with mass spectrometry proteomics (46)
Gel-based experiment (25)
Chemical cross-linking coupled with mass spectrometry proteomics (14)
Data-independent acquisition (14)
Top-down proteomics (13)
Mass spectrometry (11)
SWATH MS (11)
SRM/MRM (4)
All-ion fragmentation (3)
HDMSE (3)
Illumina HiSeq 2000 (2)
Immunopeptidomics (2)
Illumina CytoSNP 12 bead array, nanostring (1)
Infinium_OmniExpress-24v1.0 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
Axon GenePix 4000B scanning hardware (12)
Axon- GenePix4000B (5)
ScanArray Express HT [PerkinElmer] (5)
GenePix 4000B [Axon Instruments] (5)
GenePix 4000B (5)
BGISEQ-500 (5)
Illumina HiSeq 2000 (5)
Agilent Microarray Scanner G2505C (4)
Agilent Hybridisation Oven G2545A (4)
ArrayWoRx Biochip Reader [Applied Precision] (4)
418 [Affymetrix] (4)
Vortex (4)
Axon GenePix4000B (3)
Agilent Technologies Scanner G2505C (3)
Scanning hardware (3)
Illumina HiSeq 2500 (3)
NextSeq 500 (3)
Tabletop microfuge, Nanodrop (2)
Tabletop centrifuge (2)
Microcentrifuge (2)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (2)
PC (2)
None (2)
Axon GenePix 4000A scanning hardware (2)
Agilent DNA Microarray Scanner (2)
Agilent G2505B (2)
ScanArray 4000 [PerkinElmer] (2)
GeneChip Scanner 3000 7G (2)
Agilent Scanner G2505B (2)

Publication Date

2010 (639)
2013 (599)
2011 (511)
2012 (421)
2014 (367)
2015 (282)
2008 (225)
2009 (199)
2016 (183)
2007 (98)
2025 (92)
2018 (84)
2022 (80)
2021 (77)
2024 (70)
2026 (67)
2023 (67)
2020 (65)
2017 (64)
2019 (63)
2006 (47)
2005 (36)
2004 (16)
2003 (2)

UNIPROT ID/AC

272620.KPN_04357 (3)
2A5D_YEAST (3)
2AAA_YEAST (3)
4932.YDL191W (3)
4932.YEL054C (3)
4932.YER102W (3)
4932.YIL069C (3)
4932.YJR145C (3)
4932.YKR059W (3)
4932.YKR094C (3)
4932.YML026C (3)
4932.YOR133W (3)
4932.YOR182C (3)
4932.YOR312C (3)
4932.YPL220W (3)
4932.YPR043W (3)
4932.YPR080W (3)
4932.YPR132W (3)
5DNU_KLEP7 (3)
6PGD1_YEAST (3)
6PGL_KLEP7 (3)
A6T4E2_KLEP7 (3)
A6T4E4_KLEP7 (3)
A6T4E8_KLEP7 (3)
A6T4E9_KLEP7 (3)
A6T4F0_KLEP7 (3)
A6T4F7_KLEP7 (3)
A6T4F8_KLEP7 (3)
A6T4F9_KLEP7 (3)
A6T4G0_KLEP7 (3)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:18186 (4)
CHEBI:18211 (4)
CHEBI:6650 (4)
CHEBI:17964 (4)
CHEBI:30653 (4)
CHEBI:16235 (4)
CHEBI:15428 (4)
CHEBI:16027 (4)
CHEBI:16335 (4)
CHEBI:16919 (4)
CHEBI:30769 (4)
CHEBI:16562 (3)
CHEBI:24583 (3)
CHEBI:15830 (3)
CHEBI:22605 (3)
CHEBI:29019 (3)
CHEBI:45441 (3)
CHEBI:30805 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:17126 (3)
CHEBI:22660 (3)
CHEBI:27570 (3)
CHEBI:26986 (3)
CHEBI:16811 (3)
CHEBI:37084 (3)
CHEBI:43580 (3)
CHEBI:15676 (3)
CHEBI:16708 (3)
CHEBI:24898 (3)

Metabolite Name

AMP (3)
Cholic acid (3)
Glycocholic acid (3)
Tyrosine (3)
Acetyl-serine (2)
Pseudouridine-5-phosphate (2)
Glycerophosphocholine (2)
Trypanothione-disulfide (2)
Glutamate-semialdehyde (2)
Glycerylphosphorylethanolamine (2)
Ovothiol (2)
S-adenosylmethionine (2)
Hexitol (2)
Dimethylarginine (2)
Hexose phosphate (2)
Indoleacrylic acid (2)
Glutamylalanine (2)
Phosphorylethanolamine (2)
Coumarate (2)
Arabitol (2)
3,4-Dihydroxyhydrocinnamic acid (2)
Homoserine (2)
Glutamic acid (2)
Argininosuccinic acid (2)
Phosphoenolpyruvate (2)
Xylitol (2)
Phenylpyruvate (2)
Indolelactate (2)
2-oxo-5-amino-pentanoic acid (2)
Aspartic acid (2)

First Public Date

2014 (58)
2018 (16)
2023 (10)
2019 (9)
2020 (8)
2024 (7)
2015 (7)
2025 (6)
2021 (5)
2016 (5)
2013 (4)
2017 (3)
2026 (2)

Classification

bacteria (8)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (2448)
ChIP-chip by tiling array (625)
ChIP-seq (121)
ChIP-chip by array (111)
Comparative genomic hybridization by array (75)
Unknown experiment type (74)
Methylation profiling by array (61)
RNA-seq of coding RNA (46)
Proteomic profiling by array (42)
MicroRNA profiling by array (41)
Transcription profiling by tiling array (30)
Other (29)
Animal - One-color microarray (10)
Transcription profiling by RT-PCR (10)
Genotyping by array (9)
RNAi profiling by array (8)
Antigen profiling (8)
DNA-seq (8)
RIP-chip by array (7)
Human - One-color microarray (7)
RNA-seq of non coding RNA (7)
Cell line - One-color microarray (6)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
Human - Two-color microarray (2)
Plant - One-color microarray (2)
Translation profiling (2)
4C (2)
Two-color microarray (1)
Tiling path by array (1)

Release Date

2010 (664)
2013 (629)
2011 (543)
2012 (463)
2014 (408)
2015 (323)
2016 (247)
2008 (239)
2009 (219)
2017 (127)
2022 (119)
2019 (115)
2007 (112)
2021 (110)
2018 (102)
2020 (92)
2023 (89)
2025 (67)
2024 (62)
2006 (50)
2005 (43)
2026 (27)
2004 (22)
2002 (3)
2001 (3)
1999 (3)
1998 (2)
2003 (1)
2000 (1)

Lab affiliation

Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (5)
Faculty of Biology, University of Freiburg, Freiburg, Germany (4)
Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. (4)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (3)
Functional Proteomics, ICR (3)
Cedars-Sinai Medical Center (2)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (2)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (2)
Department of Cell Biology Harvard Medical School Boston, MA 02115 (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Molecular Biosciences, University of South Florida, Tampa, FL, USA Center for Antimicrobial Resistance, University of South Florida, Tampa, FL, USA (2)
Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Forschungszentrum Jülich (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (2)
Queensland Brain Institute, The University of Queensland, St Lucia Campus (Brisbane), QLD 4072, Australia (2)
Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal. (2)
Research Unit Protein Science, Helmholtz Zentrum München (2)
Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China. (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
University of Cambridge (2)
University of Freiburg Faculty of Biology Biochemistry/Functional Proteomics Schänzlestr. 1 79104 Freiburg Germany (2)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (2)
Whitehead Institute for Biomedical Research, Cambridge, MA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA (2)
1 School of Pharmacy, University of Wisconsin-Madison, Madison, WI 53705, United States 2 Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, United States (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel. 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel. (1)
1. Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates. 2. College of Pharmacy, Department of Medicinal Chemistry, University of Sharjah, 27272, United Arab Emirates (1)

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Transcriptomic responses in Arabidopsis thaliana to PIPL3 peptide treatment

In order to investigate possible roles of IDL and PIP/PIPL peptides, the transcriptomic response of Arabidopsis seedlings to treatment with PIPL3 peptide was analysed. PIPL3 (At4g37295) was chosen, as no functional data was available for this peptide; furthermore, PIPL3 was expressed in leaf tissue ...

ORGANISM(S): Arabidopsis thaliana

2015-07-10 | E-GEOD-66201 | biostudies-arrayexpress

Peptide alarmone signalling triggers an auto-active bacteriocin necessary for genetic competence

The induction of genetic competence is a strategy used by bacteria to increase their genetic repertoire under stressful environmental conditions. Recently, Streptococcus pneumoniae has been shown to co-ordinate the uptake of transforming DNA with fratricide via increased expression of the peptide ph...

ORGANISM(S): Streptococcus mutans UA159

2010-05-29 | E-GEOD-22019 | biostudies-arrayexpress

PAO1-1037

Gene expression in biofilms of PAO1 with and without the presence of 20 ug/ml peptide 1037 was analysed using microarrays.

ORGANISM(S): Pseudomonas aeruginosa

2012-04-19 | E-MTAB-962 | biostudies-arrayexpress

Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0

The aim of the array was to determine the B6 mouse sera IgG and IgM reactivity profile to linear peptide epitopes. Pooled sera from three 6-9 month old B6 mice was diluted at 1:200 for IgG specific analysis or 1:1000 for IgM specific analysis and incubated on a PEPperPRINT peptide microarray platfo...

ORGANISM(S): Mus musculus

2015-02-28 | E-GEOD-65277 | biostudies-arrayexpress

Inhibition of Staphylococcus aureus biofilm formation by gurmarin, a plant-derived cyclic peptide

Staphylococcus aureus is an opportunistic pathogen capable of causing various infections ranging from superficial skin infections to life-threatening severe diseases, including pneumonia and sepsis. This bacterium is attached to biotic and abiotic surfaces and forms biofilms that are resistant to co...

ORGANISM(S): Staphylococcus aureus

2022-09-21 | E-MTAB-12154 | biostudies-arrayexpress

Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0

The aim of the array was to determine the BXD2 mouse sera IgG and IgM reactivity profile to linear peptide epitopes. Pooled sera from three 6-9 month old BXD2 mice was diluted at 1:200 for IgG specific analysis or 1:1000 for IgM specific analysis and incubated on a PEPperPRINT peptide microarray pl...

ORGANISM(S): Mus musculus

2015-02-28 | E-GEOD-65278 | biostudies-arrayexpress

Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease

The aim of the study was to determine autoimmune BXD2 mouse sera reactivity to linear peptide epitopes from the Immune Epitope Database. Pooled sera from six 8-10 month old BXD2 mice was diluted at 1:1000 and incubated on a PEPperPRINT peptide microarray platform printed with peptide autoantigens. ...

ORGANISM(S): Mus musculus

2015-02-28 | E-GEOD-65276 | biostudies-arrayexpress

The antimicrobial peptide-sensing system aps of Staphylococcus aureus

Staphylococcus aureus is a leading cause of hospital-associated infections. In addition, highly virulent strains of methicillin-resistant S. aureus (MRSA) are currently spreading outside health care settings. Survival in the human host is largely defined by the ability of S. aureus to resist mechani...

ORGANISM(S): Staphylococcus aureus

2008-04-06 | E-GEOD-8400 | biostudies-arrayexpress

MOTS-c: A Novel Peptide Encoded by a Short Mitochondrial Open Reading Frame Regulates Metabolic Homeostasis

Mitochondria are known to be functional organelles, but their role as a signaling unit is increasingly being appreciated. The recent identification of a short open reading frame (sORF) in the mitochondrial DNA (mtDNA) that encodes a signaling peptide, humanin, suggests the possible existence of addi...

ORGANISM(S): Homo sapiens

2015-03-07 | E-GEOD-65068 | biostudies-arrayexpress

Proteomic profiling by array of tyrosine kinase activity in metastatic malignant melanoma from human tissue specimens

Tyrosine kinase activity profiling of metatstatic malignant melanoma and normal skin tissue samples was performed using peptide kinase arrays. All samples were run in triplicates with and withouth inhbitor PLX4032 and Sutent Malate in order to identify how tyrosine kinases responds to kinase inhibit...

ORGANISM(S): Homo sapiens

2013-01-17 | E-MTAB-1245 | biostudies-arrayexpress

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5574 Results

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