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TranscriptomicsHeat shock: genomic run-on (GRO) analysis
This SuperSeries is composed of the following subset Series: GSE24483: TR heat-shock GSE24484: RA heat-shock Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae 
2011-04-19 | E-GEOD-24488 | biostudies-arrayexpress
TranscriptomicsGRO analysis of rap1-sil, tpk1 & tpk2.
GRO (Genomic run-on) experiments with different mutants that affect to the accumulation of non active RNA pol II along the yeast genome. Keywords: Genomic run-on GRO There are 4 different strains: rap1-sil (without the silencing domain), RAP1(both from Graham I.R. et al 1999) and tpk1 & tpk2 mutant...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14080 | biostudies-arrayexpress
TranscriptomicsGene Expression Kinetics
We have taken five different time points of a Yeast culture in exponential grow in rich medium, each one elapsed ten minutes from de previous one (from OD600 0.36 to 0.47). Then, for each time point we have measured the transcription rates (TR) and mRNA amounts (RA) for all the genes using the Genom...
ORGANISM(S): Saccharomyces cerevisiae 
2010-03-05 | E-GEOD-11521 | biostudies-arrayexpress
TranscriptomicsOsmotic stress on yeast S. cerevisiae
mRNA amount (RA) and Transcription rate (TR) analysis of W303-1a (wt) and hog1 mutant yeast strains growing in exponential phase in YPD subjected to osmotic stress This SuperSeries is composed of the following subset Series: GSE13096: Transcription rate analysis of wild type strain subjected to osm...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13100 | biostudies-arrayexpress
TranscriptomicsTranscription rate analysis of wild type strain subjected to osmotic stress
Transcription rate (TR) analysis of W303-1a yeast strain growing in exponential phase in YPD subjected to osmotic stress Keywords: time course Transcription rate analysis by means of GRO of three independent replicates the yeast strain growing in exponential phase. Each time point replicate has bee...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13096 | biostudies-arrayexpress
TranscriptomicsTR heat-shock
Within a GRO experiment, samples for Transcription rate (TR) analysis were taken at 0, 4, 11, 16, 26 and 40 minutes after heat stress (from 25ºC to 37ºC) and subjected to run-on. Analysis was done in filters also used for RA analysis of aliquots from the same cultures. The analysis includes 3 repeat...
ORGANISM(S): Saccharomyces cerevisiae 
2011-04-19 | E-GEOD-24483 | biostudies-arrayexpress
TranscriptomicsTranscription rate analysis of W303 hog1 mutant strain subjected to osmotic stress
Transcription rate (TR) analysis of W303 hog1 mutant yeast strain growing in exponential phase in YPD subjected to osmotic stress Keywords: Time course Transcription rate analysis by means of GRO of three independent replicates the yeast strain growing in exponential phase. Each time point replicat...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13098 | biostudies-arrayexpress
TranscriptomicsRA heat-shock
Within a GRO experiment, samples for mRNA amount (RA) were taken at 0, 4, 11, 16, 26 and 40 minutes after heat stress (from 25ºC to 37ºC). Analysis was done in filters also used for Transcription rate (TR) analysis of aliquots from the same cultures. The analysis includes 3 repeats of stress treatme...
ORGANISM(S): Saccharomyces cerevisiae 
2011-04-19 | E-GEOD-24484 | biostudies-arrayexpress
TranscriptomicsDistribution of elongating and total RNA polymerase II in xrn1 mutants using GRO and RPCC
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae 
2013-05-22 | E-GEOD-43605 | biostudies-arrayexpress
TranscriptomicsNormal, sluggish and recovered fermentation
Gene expression analysis of time course experiment of [1] a synthetic must (nitrogen-rich) fermentation by a natural wine yeast; [2] a synthetic must (nitrogen-poor) fermentation by a natural wine yeast; and [3] a synthetic must (nitrogen-poor) fermentation by a natural wine yeast, supplemented at 7...
ORGANISM(S): Saccharomyces cerevisiae 
2010-07-01 | E-GEOD-5842 | biostudies-arrayexpress
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