Pfeiffer F F - OmicsDI

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Unknown (486)
Proteomics (33)
Transcriptomics (14)
Models (6)
Metabolomics (4)
Clinical (1)
Multiomics (1)
Genomics (1)

Organisms

Homo sapiens (13)
Mus musculus (12)
Haloferax volcanii (9)
Halobacterium salinarum (5)
Haloferax volcanii DS2 (4)
Rattus norvegicus (2)
Natronomonas pharaonis (1)
Agrobacterium tumefaciens (1)
Yersinia enterocolitica (1)
Archaea (1)
Mus (1)
Sus scrofa domesticus (1)

Repository

pride (30)
biostudies-arrayexpress (14)
BioModels (6)
MetaboLights (4)
MassIVE (3)
ENA (1)

Tissue

Cell culture (6)
Brain (5)
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Embryonic stem cell (1)
Epithelial cell (1)
Layer of retina (1)
Myoblast (1)
Neuron (1)
Permanent cell line cell (1)
Uterine endometrium (1)

Disease

Glaucoma (2)
Prostate cancer (1)
Multi-pathological condition. According with Working Group of the Sociedad Española de Medicina Interna (SEMI), a patients are defined as multi-pathological or polypathological when they have chronic diseases that belong to two or more of the eight next categories:-Category A: NYHA heart failure class II (slight limitation of physical activity, in which ordinary physical activity causes dyspnea, angina, fatigue or palpitations). Ischemic heart disease.- Category B: Vasculitis and systemic autoimmune diseases. Chronic kidney disease defined by elevated creatinine (>1.4 mg/dL in men or >1.3 mg/dL in women) or proteinuria (albumin/creatinine ratio >300 mg/g, microalbuminuria >3mg/dL in urine sample or albumin >300 mg/day in 24-hour urine, for 3 months).- Category C: Chronic respiratory disease classified as MCR grade 2 (unable to keep the pace of another person of the same age (1)
COVID-19 (1)
Charcot-Marie-Tooth disease (1)
Neuroblastoma (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (16)
Bottom-up proteomics (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
SWATH MS (4)
Gel-based experiment (3)
Data-dependent acquisition (2)
HDMSE (2)
All-ion fragmentation (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2000 (1)
LTQ Orbitrap XL (1)
Gas Chromatography MS - positive (1)
MicrOTOF-Q I ESI-Qq-TOF (Bruker) (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)

Publication Date

2020 (8)
2005 (6)
2017 (5)
2022 (5)
2014 (4)
2023 (4)
2025 (4)
2019 (3)
2021 (3)
2016 (2)
2011 (2)
2008 (2)
2006 (2)
2024 (2)
2018 (2)
2026 (1)
2013 (1)
2010 (1)

CHEBI ID

CHEBI:15760 (2)
CHEBI:16610 (2)
CHEBI:16811 (2)
CHEBI:16958 (2)
CHEBI:17521 (2)
CHEBI:17620 (2)
CHEBI:18186 (2)
CHEBI:22652 (2)
CHEBI:28800 (2)
CHEBI:30915 (2)
CHEBI:78697 (2)
CHEBI:100147 (1)
CHEBI:10018 (1)
CHEBI:100246 (1)
CHEBI:10025 (1)
CHEBI:10026 (1)
CHEBI:10072 (1)
CHEBI:10093 (1)
CHEBI:10101 (1)
CHEBI:10105 (1)
CHEBI:10106 (1)
CHEBI:10110 (1)
CHEBI:101278 (1)
CHEBI:10130 (1)
CHEBI:10136 (1)
CHEBI:101381 (1)
CHEBI:102265 (1)
CHEBI:102484 (1)
CHEBI:102524 (1)
CHEBI:10447 (1)

Metabolite Name

Spermidine (2)
Tyramine (2)
(+)-12-hydroxy-9Z-hexadecenoic acid (1)
(+)-Armillarin (1)
(+)-Erysotrine (1)
(+)-Scalarin (1)
(+)-Tephrorin B (1)
(+)-endo-beta-Bergamotene (1)
(+)-trans-C75 (1)
(+/-)-(Z)-2-(5-Tetradecenyl)cyclobutanone (1)
(+/-)-1-(4-Methylphenyl)ethanol (1)
(+/-)-11-Methylhexadecanoic acid (1)
(+/-)-17-HDoHE (1)
(+/-)-2,4,8-Trimethyl-7-nonen-2-ol (1)
(+/-)-2-Methylthiazolidine (1)
(+/-)-20-HDoHE (1)
(+/-)-Camphoric acid (1)
(+/-)-Dulciol E (1)
(+/-)-Methyl 5-acetoxyhexanoate (1)
(+/-)-Pelletierine (1)
(+/-)-Rollipyrrole (1)
(+/-)11-HDoHE (1)
(+/-)12,13-DiHOME (1)
(+/-)13-HpODE (1)
(+/-)5-HEPE (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-3-Cyanomethyl-3-hydroxy-1H-indol-2(3H)-one (1)
(-)-8-Demethylmaritidine (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Asbestinine 2 (1)

First Public Date

2015 (1)

Modelling Approach

Ordinary differential equation model (5)

Study status

Not yet recruiting (1)

Lab affiliation

Department of Biology, University of Pennsylvania (3)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen, Germany (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
Center for Genomic Regulation (CRG) (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Charite- Universitaetsmedizin Berlin, 10117 Berlin, Germany (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (1)
Department of Gene Regulation Friedrich Miescher Institute for Biomedical Research (1)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida, 32611 (1)
Experimental Ophthalmology, Department of Ophthalmology, Mainz, Rheinland-Pfalz, Germany (1)
Experimental Ophthalmology, University Medical Center Mainz (1)
Institute for Immunology, University Medical Center Mainz. Langenbeckstr. 1 55131 Mainz, Germany (1)
Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata (UNMDP), CONICET, Mar del Plata (7600), Argentina (1)
Instiute for Microbiology (1)
Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany Gene and RNA Therapy Center (GRTC), Faculty of Medicine, University of Tübingen, Tübingen, Germany iFIT Cluster of Excellence (EXC2180) "Image-Guided and Functionally Instructed Tumor Therapies, University of Tübingen, Tübingen, Germany (1)
Max Planck Institute for Biophysical Chemistry; University Medical Center Goettingen (1)
Medical Bioinformatics, Medizinisches Proteom-Center, Medical Faculty, Ruhr University Bochum, Bochum, Germany (1)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (1)
Sequence database group (1)
University Medical Center Mainz, Germany, Institute for Immunology (1)
University of Pennsylvania Department of Biology (1)
University of Pennsylvania, Department of Biology (1)
Univesity of Copenhagen, Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research, Proteomics Program (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (2)
Methylation profiling by array (1)
Interventional (1)

Release Date

2025 (57)
2023 (48)
2022 (47)
2020 (39)
2021 (37)
2018 (34)
2019 (32)
2024 (31)
2017 (24)
2014 (21)
2016 (19)
2015 (19)
2013 (18)
2012 (15)
2011 (13)
2009 (9)
2026 (8)
2010 (7)
2006 (6)
2008 (5)
2007 (5)
2005 (2)
2004 (2)
1999 (2)

Location

Colombia (1)

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Lectin-based affinity enrichment and characterization of N-glycoproteins from the human tear film by mass spectrometry

Glycosylation of proteins is one of the most common post-translational modification (PTM) and plays important regulatory functions in diverse biological processes such as protein stability or cell signaling. Accordingly, glycoproteins are also a consistent part of the human tear film proteome mainta...

ORGANISM(S): Homo sapiens (Human) Sus scrofa domesticus (domestic pig)

2023-01-25 | PXD038280 | Pride

Revision of the carnivorous snail genus Discartemon Pfeiffer, 1856, with description of twelve new species (Pulmonata, Streptaxidae).

Not available

S-EPMC4023267 | biostudies-literature

Real-world data prognostic model of overall survival in patients with advanced NSCLC receiving anti-PD-1/PD-L1 immune checkpoint inhibitors as second-line monotherapy.

Not available

S-EPMC9575492 | biostudies-literature

Study of a High-Voltage NMC Interphase in the Presence of a Thiophene Additive Realized by Operando SHINERS.

Not available

S-EPMC9923680 | biostudies-literature

PREDICT: untargeted metabolomic profiling in a Brassica napus (canola) breeding population by GC-MS

Genome-wide association studies (GWAS) identified thousands of genetic loci associated with complex plant traits, including many traits of agronomical importance. However, functional interpretation of GWAS results remains challenging because of large candidate regions due to linkage disequilibriu...

2023-11-20 | MTBLS8056 | MetaboLights

ProSIMSIt: The Best of Both Worlds in Data-Driven Rescoring and Identification Transfer.

Not available

S-EPMC11976853 | biostudies-literature

Fatal COVID-19 pulmonary disease involves ferroptosis.

SARS-CoV-2 infection causes severe pulmonary manifestations, with poorly understood mechanisms and limited treatment options. Hyperferritinemia and disrupted lung iron homeostasis in COVID-19 patients imply that ferroptosis, an iron-dependent cell death, may occur. Immunostaining and lipidomic an...

2024-07-11 | MTBLS3107 | MetaboLights

Transcription profiling of transgenic mice (tTA/IkappaBalpha-AA) treated with doxycycline (DOX), which represses expression of the transgenic IkappaBalpha

double transgenic mice (tTA/IkappaBalpha-AA) were treated with doxycycline (DOX), which represses expression of the transgenic IkappaBalpha. Double transgenic mice without Dox-treatment overexpress the transdominant IkappaBalpha, which represses NFkappaB activation.

ORGANISM(S): Mus musculus

2006-05-10 | E-MEXP-358 | biostudies-arrayexpress

Mother and Daughter Carrying of the Same Pathogenic Variant in FGFR2 with Discordant Phenotype.

Not available

S-EPMC9319849 | biostudies-literature

Gonzalez2010_N_pharaonis_metabolism

This is metabolic network reconstruction of Natronomonas pharaonis described in the article Characterization of growth and metabolism of the haloalkaliphile Natronomonas pharaonis. Gonzalez O, Oberwinkler T, Mansueto L, Pfeiffer F, Mendoza E, Zimmer R,...

2005-01-01 | MODEL1011080001 | BioModels

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