Phospho-proteomics

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Proteomics (480)
Unknown (227)
Genomics (53)
Transcriptomics (27)
Other (4)
Metabolomics (2)
Methylation profiling (1)

Organisms

Schizosaccharomyces pombe (422)
Sinorhizobium meliloti BL225C (422)
Sus scrofa domesticus (422)
Saccharomyces cerevisiae (422)
Staphylococcus aureus (422)
Rattus norvegicus (422)
Escherichia coli (422)
Methylohalobius crimeensis 10Ki (422)
Homo sapiens (422)
Shigella flexneri (422)
Allexis (422)
Shigella (422)
Zea mays (422)
Meleagris gallopavo (422)
Medicago truncatula (422)
Listeria monocytogenes (422)
Entamoeba histolytica HM-1:IMSS-A (422)
Solanum tuberosum (422)
Arabidopsis thaliana (422)
Leishmania major strain Friedlin (422)
Mus musculus (422)
Callinectes sapidus (421)
Bos taurus (421)
Drosophila melanogaster (421)
Oryza sativa Indica Group (420)
Homo sapiens (51)
Mus musculus (19)
Arabidopsis thaliana (3)
Rattus norvegicus (2)
BTO:0000214 (2)

Organisms

Homo sapiens (24)
Mus musculus (13)

Repository

pride (422)
ENA (43)
geo (37)
MassIVE (23)
jPOST (12)
iProX (9)
PeptideAtlas (7)
PanoramaPublic (4)
PAXDB (3)
biostudies-arrayexpress (2)
EGA (2)
GNPS (1)
GPMDB (1)
MetaboLights (1)

Tissue

Cell culture (121)
Epithelial cell (42)
Brain (35)
Permanent cell line cell (17)
Liver (17)
Lung (15)
Heart (13)
Fibroblast (12)
Colon (12)
Plant cell (11)
B cell (11)
Kidney (10)
T cell (10)
Cell suspension culture (9)
Skin (8)
Bone marrow (8)
Leaf (8)
Others (7)
Hepatocyte (7)
Melanocyte (6)
Embryonic stem cell (6)
Stem cell (6)
Spleen (6)
Blood cell (6)
Malignant cell (5)
Fibroblast of lung (5)
Skeletal muscle (5)
Blood platelet (4)
Macrophage (4)
Blood plasma (4)

Disease

Breast cancer (12)
Disease free (10)
Colon cancer (10)
Acute leukemia (9)
Alzheimer's disease (7)
Malignant neoplasm of ovary (7)
Cardiovascular system disease (5)
Amyotrophic lateral sclerosis (5)
Multiple myeloma (4)
Lymphoma (4)
Melanoma (4)
Hepatocellular carcinoma (3)
Non-small cell lung carcinoma (3)
Brain glioblastoma multiforme (3)
Pancreatic ductal adenocarcinoma (3)
Lung cancer (3)
Neuroblastoma (3)
Cervix carcinoma (3)
Parkinson's disease (3)
Type 2 diabetes mellitus (3)
Skin cancer (2)
Focal segmental glomerulosclerosis (2)
Osteosarcoma (2)
Osteoblastoma (2)
Human immunodeficiency virus infectious disease (2)
Pancreatic cancer (2)
Colorectal cancer (2)
Brain cancer (2)
Glioblastoma (2)
Not Available (1)

Technology Type

Mass Spectrometry (422)
Shotgun proteomics (241)
Bottom-up proteomics (121)
Data-dependent acquisition (63)
Affinity purification coupled with mass spectrometry proteomics (40)
Data-independent acquisition (30)
Gel-based experiment (14)
SWATH MS (10)
DiaPASEF (6)
Top-down proteomics (6)
SRM/MRM (5)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry (1)
Metaproteomics (1)
MSE (1)

Instrument Platform

Orbitrap Fusion Lumos (10)
Orbitrap Fusion (7)
QExactive (7)
Q Exactive HF (2)
Q Exactive (2)
Instrument (1)
Orbitrap Lumos (1)
TimsTOF HT (1)
Orbitrap Fusion ETD (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Elite (1)
LTQ (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
5975C Series GC/MSD (Agilent) (1)
FTICR (1)
LTQ-Orbitrap (1)

Publication Date

2026 (80)
2025 (74)
2024 (68)
2022 (64)
2023 (56)
2020 (40)
2021 (39)
2018 (24)
2017 (24)
2019 (18)
2014 (16)
2016 (6)
2015 (4)
2013 (2)
2008 (1)
2011 (1)

UNIPROT ID/AC

4565.Traes_6BL_7799EECBB.1 (3)
4565.Traes_5DL_9E6F66306.2 (3)
A0A3B6LW21_WHEAT (3)
4565.Traes_7AL_F5534777D.1 (3)
4565.Traes_1BL_C86F8C02A.1 (3)
A0A3B6FUU8_WHEAT (3)
4565.Traes_1BL_0D5375344.1 (3)
4565.Traes_5AL_232414653.1 (3)
A0A3B6EF89_WHEAT (3)
4565.Traes_2DS_65A89094D.1 (3)
4565.Traes_7BL_09E7513CB.1 (3)
4565.Traes_1DL_34DA247531.1 (3)
4565.Traes_3B_15FC2C014.1 (3)
4565.Traes_1DS_D1B39A182.1 (3)
A0A3B6AXY6_WHEAT (3)
4565.Traes_2BS_F2A8D87C5.1 (3)
4565.Traes_2BL_E20D7B8CA1.1 (3)
4565.Traes_7DS_4E621A250.2 (3)
4565.Traes_5AL_C3F3E95BC.1 (3)
4565.Traes_6AL_934384210.1 (3)
4565.Traes_7DL_F5534777D.1 (3)
4565.Traes_4AS_F08668B5A.1 (3)
4565.Traes_7DL_CDEB2E55D.1 (3)
4565.Traes_4DL_BF24DFB52.1 (3)
4565.Traes_4DS_DB778297B.1 (3)
4565.Traes_3AL_08B0C8C4A.1 (3)
A0A3B6RFH8_WHEAT (3)
A0A3B6SMI1_WHEAT (3)
4565.Traes_6AS_99F9277FB.1 (3)
4565.Traes_4DS_030590E8C.1 (3)

ENSEMBL ID

ENSG00000170477 (6)
ENSG00000247315 (5)
ENSG00000147251 (1)

Metabolite Name

TG(22:0/o-18:0/20:1(11Z)) (1)
TG(24:0/18:1(11Z)/o-18:0) (1)
TG(24:0/18:1(9Z)/o-18:0) (1)
TG(22:1(13Z)/20:0/o-18:0) (1)
TG(24:0/o-18:0/18:1(9Z)) (1)
TG(24:1(15Z)/18:0/o-18:0) (1)
TG(24:0/o-18:0/18:1(11Z)) (1)
TG(18:0/24:1(15Z)/o-18:0) (1)
TG(18:1(11Z)/24:0/o-18:0) (1)
TG(18:1(9Z)/24:0/o-18:0) (1)
TG(20:1(11Z)/22:0/o-18:0) (1)
TG(20:0/o-18:0/22:1(13Z)) (1)
TG(22:0/20:1(11Z)/o-18:0) (1)
TG(18:0/o-18:0/24:1(15Z)) (1)
TG(20:0/22:1(13Z)/o-18:0) (1)
Madecassoside (1)
O-b-D-glucopyranosyl-(1->3)-O-2-(acetylamino)-2-deoxy-b-D-glucopyranosyl-(1->3)-O-[6-deoxy-a-L-galactopyranosyl-(1->4)]-O-b-D-galactopyranosyl-(1->4)-O-[6-deoxy-a-L-galactopyranosyl-(1->3)]-D-Glucose (1)
CDP-DG(16:1(9Z)/18:2(9Z,12Z)) (1)
CDP-DG(18:2(9Z,12Z)/16:1(9Z)) (1)
Myristoleoyl-CoA (1)
5Z-tetradecenoyl-CoA (1)
(2E)-Tetradecenoyl-CoA (1)
TG(15:0/22:5(4Z,7Z,10Z,13Z,16Z)/24:0) (1)
TG(15:0/24:0/22:5(4Z,7Z,10Z,13Z,16Z)) (1)
TG(15:0/22:5(7Z,10Z,13Z,16Z,19Z)/24:0) (1)
TG(24:0/15:0/22:5(7Z,10Z,13Z,16Z,19Z)) (1)
TG(15:0/22:4(7Z,10Z,13Z,16Z)/24:1(15Z)) (1)
TG(24:1(15Z)/15:0/22:4(7Z,10Z,13Z,16Z)) (1)
TG(15:0/24:1(15Z)/22:4(7Z,10Z,13Z,16Z)) (1)
TG(24:0/15:0/22:5(4Z,7Z,10Z,13Z,16Z)) (1)

First Public Date

2026 (11)
2024 (11)
2025 (7)
2022 (6)
2021 (2)
2019 (2)
2018 (2)
2023 (1)
2020 (1)

Modification

2x(15)N labeled L-lysine (3)
4x(15)N labeled L-arginine (3)
17.03448 (1)
14.01565 (1)
4-dinitrophenyl modified residue (1)
79.966331 (1)
15.994915 (1)
N6 (1)
4 (1)
57.021464 (1)

Study type

Transcription profiling by array (1)
Methylation profiling by array (1)

Release Date

2023 (31)
2022 (27)
2025 (22)
2024 (22)
2021 (19)
2019 (16)
2018 (15)
2020 (14)
2017 (13)
2016 (9)
2014 (9)
2015 (8)
2011 (6)
2013 (5)
2026 (4)
2012 (3)
2008 (2)
2007 (2)
2010 (1)
2009 (1)

Lab affiliation

Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (6)
Department of Molecular Cell Biology, Weizmann institute of Science, Israel (5)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (4)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (3)
Moffitt Cancer Center Tampa, FL, USA (3)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (2)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw (2)
Department of Chemistry and Biochemistry. University of Colorado, Boulder. Boulder, CO 80303 (2)
Department of Life Science, National Taiwan University (2)
College of Life Sciences, University of Dundee (2)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Paul Scherrer Institute, Center for Radiopharmaceutica Sciences, 5232 Villigen PSI, Switzerland (2)
Moffitt Cancer Center (2)
Queensland Brain Institute, The University of Queensland, St Lucia Campus (Brisbane), QLD 4072, Australia (2)
Boston University (2)
Vice Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen Faculty of Health and Medical Sciences Blegdamsvej 3b DK-2200 Copenhagen Denmark (2)
Group Leader (CRUK Career Development Fellow) (2)
Department of Biochemistry, University of Oxford (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt; Frankfurt, Germany. (2)
Proteomics facility, Central Science Laboratory, University of Tasmania (2)
Yale University (2)
IRCCS Istituto G Gaslini (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Department of Laboratory Medicine and Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, United States of America (1)

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Targeting proline in (phospho)proteomics.

Not available

S-EPMC7496877 | biostudies-literature

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution.

Not available

S-EPMC8651693 | biostudies-literature

SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.

Not available

S-EPMC4489257 | biostudies-literature

Dataset for quantitative phospho-proteomics analysis of a serial hepatoma cell lines with increasing invasion and metastasis potential

Here, we used isobaric tags for relative and absolute quantitation (iTRAQ) based quantitative phospho-proteomics approach to identify biomarkers associated with hepatoma recurrence/metastasis in hepatoma cell lines with increasing metastasis ability.

ORGANISM(S): Homo Sapiens

PXD015569 |

PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.

Not available

S-EPMC6364269 | biostudies-literature

TNFα affects CREB-mediated neuroprotective signaling pathways of synaptic plasticity in neurons as revealed by proteomics and phospho-proteomics.

Not available

S-EPMC5601134 | biostudies-literature

Phospho-proteomics analysis of ATR inhibitor responses in sensitive and resistant human breast cancer cells

To search in an unbiased manner for the specific mechanisms causing differential ATRi sensitivity, we performed total and phosphoproteomic analyses using tandem mass tagging (TMT) mass spectrometry. Extracted proteins were compared between three sensitive and three resistant human breast cancer cell...

ORGANISM(S): Homo sapiens (Human)

2026-05-19 | PXD061444 | Pride

Analyzing the influence of kinase inhibitors on DNA repair by differential proteomics of chromatin-interacting proteins and nuclear phospho-proteins.

Not available

S-EPMC5762299 | biostudies-literature

Phospho-Proteomics Identifies D-Group MAP Kinases as Substrates of the <i>Arabidopsis</i> Tyrosine Phosphatase RLPH2.

Not available

S-EPMC12817480 | biostudies-literature

Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids.

Not available

S-EPMC10276052 | biostudies-literature

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794 Results

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