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TranscriptomicsPhylogenetic & expression analysis of the bHLH transcription factor family: genomic approach to cellular differentiation
A phylogenetic analysis of seven different species (human, mouse, rat, worm, fly, yeast, and plant) utilizing all (541) basic helix-loop-helix (bHLH) genes identified, including expressed sequence tags (EST), was performed. A super-tree involving six clades and a structural categorization involving ...
ORGANISM(S): Rattus norvegicus 
2010-02-21 | E-GEOD-20259 | biostudies-arrayexpress
TranscriptomicsPhylogenetic, microbiological and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor
Phylogenetic, microbiological and comparative genomic analysis was used to examine the diversity among members of the genus Caldicellulosiruptor with an eye towards the capacity of these extremely thermophilic bacteria for degrading the complex carbohydrate content of plant biomass. Seven species fr...
ORGANISM(S): Caldicellulosiruptor lactoaceticus 
2010-11-29 | E-GEOD-23606 | biostudies-arrayexpress
MetabolomicsIntegrated metabolomics and transcriptomics analysis elucidate the candidate genes for polyphyllin biosynthesis in Paris

Polyphyllins are the key components in Paris, with varying levels and compositions among different species. This study investigated polyphyllin compositions of 206 Paris samples from 16 different producing areas. 9 Paris polyphylla var. yunnanensis, 3 Paris fargesii and 3 Paris forrestii were sel...

2024-10-18 | MTBLS10682 | MetaboLights
GenomicsPhylogenetic analysis of Lucilia bufonivora
Phylogenetic analysis of Lucilia bufonivora using Cox1 gene sequence data.
PRJEB21839 | ENA
GenomicsThe complete chloroplast genome of Tetraselmis suecica and its phylogenetic analysis
The complete chloroplast genome of Tetraselmis suecica and its phylogenetic analysis
PRJEB52497 | ENA
TranscriptomicsRNA-Seq Based Reconstruction of the Phylogenetic Tree of the Genus Flaveria (Asteraceae)
The genus Flaveria has been extensively used as a model to study the evolution of C4 photosynthesis as it contains both C3 and C4 species as well as a number of species that exhibit intermediate types of photosynthesis. The current phylogenetic tree of the Flaveria genus contains 21 of the 23 known ...
ORGANISM(S): Flaveria cronquistii 
2015-01-08 | E-GEOD-54339 | biostudies-arrayexpress
GenomicsWGS data to conduct phylogenetic analysis in Trichinella
WGS data to conduct phylogenetic analysis in Trichinella
PRJNA716532 | ENA
GenomicsPhylogenetic, Ecological, and Agronomic Characterization of Coffea dactylifera, a Wild Coffee Relative from the Democratic Republic of Congo
Coffea dactylifera phylogenetic analysis
PRJEB90669 | ENA
TranscriptomicsPhylogenetic & expression analysis of the bHLH transcription factor family: genomic approach to cellular differentiation
A phylogenetic analysis of seven different species (human, mouse, rat, worm, fly, yeast, and plant) utilizing all (541) basic helix-loop-helix (bHLH) genes identified, including expressed sequence tags (EST), was performed. A super-tree involving six clades and a structural categorization involving ...
ORGANISM(S): Rattus norvegicus 
2010-02-11 | GSE20259 | GEO
MetabolomicsMetabolomic analysis on Microcystis aeruginosa cells under various amino acid supplementation conditions
Threonine, an essential amino acid for translation, exhibits toxicity towards slow-growing cyanobacteria. This prompted us to perform transcriptomic and proteomic analyses using Microcystis aeruginosa cells treated with threonine, revealing a noteworthy upregulation of thrC, annotated as pyridoxal 5...
2025-04-02 | MTBLS11852 | MetaboLights
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