Phytol - OmicsDI

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Unknown (166)
Metabolomics (103)
Proteomics (49)
Transcriptomics (21)
Genomics (15)
Models (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (49)
Andropogon gerardi (49)
Bacteria (49)
Bartonella quintana JK 31 (49)
Canis lupus familiaris (49)
Cnidaria (49)
Ectopseudomonas oleovorans CECT 5344 (49)
Ensifer adhaerens (49)
Halictus scabiosae (49)
Human immunodeficiency virus 1 (49)
Mesocricetus auratus (49)
Miscanthus x giganteus (49)
Morchella importuna (49)
Mus musculus (49)
Panicum virgatum (49)
Pseudomonas aeruginosa PA103 (49)
Pseudomonas aeruginosa SJTD-1 (49)
Rabies virus Nishigahara RCEH (49)
Rattus norvegicus (49)
Rattus rattus (49)
Arabidopsis thaliana (10)
Mus musculus (3)
Populus euphratica (1)
Betula pendula (1)
Populus tremula x Populus alba (1)
Rattus norvegicus (1)
Phytophthora nicotianae INRA-310 (1)
Phytophthora nicotianae (1)
Homo sapiens (1)
Pseudo-nitzschia multistriata (1)

Organisms

Arabidopsis thaliana (5)
Sinorhizobium meliloti WSM1022 (1)
Phytophthora nicotianae INRA-310 (1)
Homo sapiens (1)

Repository

MetaboLights (78)
pride (49)
MetabolomicsWorkbench (24)
ENA (15)
biostudies-arrayexpress (14)
geo (7)
BioModels (2)
GNPS (1)

Tissue

Plant cell (14)
Leaf (11)
Plant (6)
Algae (4)
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Blood (3)
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Root (3)
Gametophore (2)
Seedling (2)
Seaweed (1)
Roots (1)
Cells (1)
Leaf (1)
Muscle (1)
Cultured cells (1)
Cell suspension culture (1)
Cotyledon (1)
Embryo (1)
Endosperm (1)
Etiolated plant tissue (1)
Fibroblast (1)
Flower bud (1)
Liver (1)
Plant embryo (1)
Protonema (1)
Shoot (1)

Disease

Mosaic virus infection (1)
Infection (1)
Stress (1)
Heart disease (1)
Obesity (1)
Bacterial infection (1)
Diabetes (1)
Disease free (1)
Plasmodium falciparum malaria (1)
Refsum disease (1)

Technology Type

Mass Spectrometry (73)
Mass spectrometry (58)
Shotgun proteomics (28)
EI (22)
Mass spectrometry assay (20)
Data-dependent acquisition (12)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (4)
ESI (3)
HDMSE (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (25)
Liquid Chromatography MS - negative - reverse phase (21)
Gas Chromatography MS - positive (13)
Liquid Chromatography MS - positive - reverse-phase (13)
Liquid Chromatography MS - negative - reverse-phase (12)
Gas Chromatography MS - (5)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - alternating (2)
Agilent 5975E GC/MSD (Agilent) (2)
SYNAPT HDMS (Waters) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Bruker Daltonics maXis series|1001547 (1)
HILIC_Neg_Synapt_HDMS (1)
HILIC_Pos_Synapt_HDMS (1)
RP_Neg_Synapt_HDMS (1)
RP_Pos_Synapt_HDMS (1)
Q Exactive Plus (Thermo Scientific) (1)
Agilent5975C (1)
Trace DSQ quadrupole (Thermo Electron) (1)
ISQ LT (Thermo) (1)
Quattro micro API (Waters) (1)
SYNAPT G2-XS QTOF (Waters, UK) (1)
Liquid Chromatography MS - negative - reversed-phase (1)
Liquid Chromatography MS - positive - reversed-phase (1)
Pagasus 4D GC-MS (LECO) (1)
PEGASUS HT GC-MS (LECO) (1)
Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - alternating - direct infusion (1)

Publication Date

2025 (25)
2026 (23)
2022 (18)
2023 (14)
2020 (11)
2024 (9)
2021 (8)
2018 (8)
2017 (8)
2014 (7)
2015 (5)
2019 (4)
2007 (3)
2006 (2)
2004 (2)
2016 (2)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:17327 (37)
CHEBI:24092 (1)
CHEBI:49609 (1)
CHEBI:14282 (1)
CHEBI:5150 (1)
CHEBI:21821 (1)
CHEBI:7373 (1)
CHEBI:58763 (1)
CHEBI:48957 (1)
CHEBI:42126 (1)
CHEBI:20516 (1)
CHEBI:14172 (1)
CHEBI:15890 (1)
CHEBI:4620 (1)
CHEBI:14836 (1)
CHEBI:8193 (1)
CHEBI:26121 (1)
CHEBI:17090 (1)
CHEBI:58011 (1)
CHEBI:14885 (1)
CHEBI:8400 (1)
CHEBI:26260 (1)
CHEBI:85008 (1)
CHEBI:20349 (1)
CHEBI:11979 (1)
CHEBI:1813 (1)
CHEBI:85531 (1)
CHEBI:12305 (1)
CHEBI:4140 (1)
CHEBI:12306 (1)

Metabolite Name

Phytol (63)
Hypoxanthine (37)
Uracil (31)
Phytosphingosine (29)
Sphinganine (29)
Linoleic acid (29)
L-Leucine (29)
Myristic acid (28)
L-Tyrosine (28)
L-Phenylalanine (28)
L-Proline (27)
Taurine (27)
Oleamide (27)
Adenosine (27)
Sucrose (27)
L-Valine (27)
Guanine (26)
Palmitic acid (26)
L-Tryptophan (26)
Adenine (26)
L-Isoleucine (26)
Benzoic acid (25)
Citric acid (25)
L-Arginine (24)
Cholesterol (24)
L-Histidine (24)
Azelaic acid (24)
Guanosine (24)
Norvaline (23)
L-Lysine (23)

IsPrivate

False (2)

Submitter Keywords

Not Peer Reviewed (1)

First Public Date

2014 (5)
2025 (4)
2020 (2)
2026 (1)
2024 (1)
2021 (1)
2017 (1)

Modelling Approach

Other (1)
Constraint-based model (1)

Study type

Transcription profiling by array (14)

Release Date

2022 (29)
2025 (28)
2020 (20)
2024 (18)
2021 (17)
2023 (16)
2017 (8)
2015 (5)
2014 (5)
2019 (5)
2018 (5)
2007 (3)
2006 (3)
2016 (3)
2009 (2)
2004 (2)
2013 (2)
2010 (2)
1999 (2)
2005 (1)
2026 (1)
2012 (1)
2011 (1)
2002 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (4)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Department of Biology University of Fribourg Switzerland (3)
ARC Centre of Excellence in Plant Energy Biology The University of Western Australia (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Science Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany (1)
Chemical and Biological engineering, The University of Sheffield (1)
Department Willmitzer | Small-Molecule Signaling Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam (1)
Department Willmitzer | Small-Molecule Signaling Max-Planck-Institut für Molekulare Pflanzenphysiologie, Wissenschaftspark Golm, Am Mühlenberg 1, 14476 Potsdam (1)
Department of Biological Sciences - University of Alberta (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biophysics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Department of Environment and Biodiversity, University of Salzburg, Hellbrunnerstraße 34, 5020 Salzburg, Austria (1)
Department of Parasitology, Institute of Biomedical Sciences of the University of São Paulo, Av. Lineu Prestes 1374, CEP 05508-000, São Paulo, SP, Brazil. Telephone: +55 11 3091-7330 Fax: 5511 3091-7417. E-mail address: amkatzin@icb.usp.br (A. M. Katzin) (1)
Department of Plant Pathology, University of California, Davis (1)
Department of Plant Sciences, Rothamsted Research, West Common, Harpenden, Herts, AL5 2JQ, UK (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)
Division of Plant Sciences, University of Dundee at JHI, Scotland, UK (1)
Drug Discovery and Evaluation Unit, Center for Research of Pathogenicity and Virulence of Parasites, BIOCEV, Charles University in Prague (1)
Faculty of Biology Technion - Israel Institute of Technology Haifa, Israel (1)
Génétique Quantitative et Évolution - Le Moulon INRA - Univ. Paris Sud - CNRS - AgroParisTech Ferme du Moulon 91190 Gif-sur-Yvette, France (1)
Head, Chair Plant Biotechnology Faculty of Biology University of Freiburg Schaenzlestrasse 1 D-79104 Freiburg Germany (1)
Institut für Biowissenschaften, Abteilung Pflanzenphysiologie, Universität Rostock, A.-Einstein-Str. 3, Rostock D-18059, Germany (1)
Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - eV, Sulfaging group (1)
Leibniz-Institut für Pflanzenbiochemie Weinberg 3 06120 Halle (Saale) (1)
Plant system biolog of Ugent-VIB (1)
Proteomics mass spectrometry core facility, Central Science Laboratory, University of Tasmania, Australia (1)

Tags

xref:PubMed:24180234 (2)
xref:PubMed:28152090 (2)
xref:PubMed:42207870 (1)
xref:PubMed:41446143 (1)
xref:PubMed:41327931 (1)
xref:PubMed:32160399 (1)

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Transcription profiling of inguinal lymph nodes from rats injected with pristane, phytol, both pristane and phytol or untreated to obtain a molecular understanding of the protective effects of phytol on pristane induced arthritis

Comparison of gene expression in inguinal lymph nodes in four groups of rats; one with induced arthritis by injection with pristane, one injected with phytol, one injected with both pristane and phytol, and one untreated group. The objective was to obtain a molecular understanding of the protective ...

ORGANISM(S): Rattus norvegicus

2007-12-31 | E-MEXP-782 | biostudies-arrayexpress

Expression data from Amacr knock-out mouse intestine

Bile acids play multiple roles in vertebrate metabolism by facilitating lipid absorption in the intestine and acting as a signaling molecule in lipid and carbohydrate metabolism. Bile acids are also the main route to excrete excess cholesterol out of the body. Alpha-methyl-Coa racemase (Amacr) is on...

ORGANISM(S): Mus musculus

2015-12-22 | E-GEOD-40124 | biostudies-arrayexpress

Expression data from Amacr knock-out mouse liver and intestine

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Mus musculus

2015-12-22 | E-GEOD-40125 | biostudies-arrayexpress

Expression data from Amacr knock-out mouse liver

ORGANISM(S): Mus musculus

2015-12-22 | E-GEOD-40085 | biostudies-arrayexpress

Sex-dependent impact of Scp-2/Scp-x gene ablation on hepatic phytol metabolism.

Not available

S-EPMC5697903 | biostudies-literature