Pierce David D - OmicsDI

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Proteomics (110)
Unknown (39)
Transcriptomics (12)
Genomics (9)
Metabolomics (3)
Genomic (1)

Organisms

Homo sapiens (55)
Mus musculus (35)
Rattus norvegicus (6)
Saccharomyces cerevisiae (5)
Caenorhabditis elegans (5)
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (2)
Ovis aries (2)
Shigella sonnei (1)
Dehalobacter restrictus (1)
Clostridium botulinum (1)
Aeromonas schubertii (1)
Bacillus subtilis (1)
Bacteroides fragilis 638R (1)
Candida albicans (1)
Chlorocebus aethiops (1)
Danio rerio (1)
Escherichia coli (1)
Middle East respiratory syndrome-related coronavirus (1)
Mycolicibacterium smegmatis MC2 155 (1)
Plasmodium falciparum 3D7 (1)
Severe acute respiratory syndrome-related coronavirus (1)
Staphylococcus aureus (1)
Sus scrofa domesticus (1)

Organisms

Cynoscion nebulosus (4)

Repository

pride (109)
biostudies-arrayexpress (17)
ENA (4)
MetaboLights (3)
dbGaP (1)
PeptideAtlas (1)

Tissue

Cell culture (27)
Brain (11)
Epithelial cell (10)
Blood (6)
Embryonic stem cell (5)
Kidney (5)
Whole body (5)
Blood cell (4)
Heart (4)
Fibroblast (3)
Hepatocyte (3)
B cell (2)
Cell suspension culture (2)
Hippocampal neuron (2)
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Primary cell (2)
Primary cell line cell (2)
Rumen epithelium (2)
Skeletal muscle (2)
Adipose tissue (1)
Barrett's esophagus (1)
Bipolar neuron (1)
Blood plasma (1)
Bone marrow (1)
Breast (1)
Cardiac muscle cell (1)
Cardiac muscle tissue (1)
T cell (1)
U2-OS cell (1)

Disease

Breast cancer (5)
Chronic myeloid leukemia (4)
Colon cancer (3)
Disease free (3)
Cardiovascular system disease (2)
Kidney cancer (2)
Head and neck squamous cell carcinoma (1)
Alzheimer's disease (1)
Brain cancer (1)
Cervical adenocarcinoma (1)
Chronic kidney disease (1)
Developmental and epileptic encephalopathy 9 (1)
Esophagus adenocarcinoma (1)
Eye disease (1)
Gastric adenocarcinoma (1)
Huntington Disease (1)
Leukoencephalopathy with vanishing white matter (1)
Malignant neoplasm of ovary (1)
Osteosarcoma (1)
Pancreatic ductal adenocarcinoma (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)
Skeletal muscle atrophy (1)
Skin cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (109)
Shotgun proteomics (67)
Bottom-up proteomics (21)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-independent acquisition (5)
DiaPASEF (5)
SWATH MS (4)
Mass spectrometry (3)
Gel-based experiment (3)
All-ion fragmentation (2)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Exactive (Thermo Scientific) (2)
Vortex (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Direct infusion MS - positive (1)
LCQ DECA (1)

Publication Date

2023 (27)
2026 (18)
2021 (15)
2025 (12)
2022 (10)
2024 (6)
2020 (6)
2018 (6)
2016 (5)
2019 (5)
2015 (4)
2017 (3)
2008 (3)
2010 (2)
2014 (1)
2013 (1)
2012 (1)
2011 (1)
2007 (1)
2006 (1)
2004 (1)
2002 (1)

UNIPROT ID/AC

Q12337 (1)
R0020C (1)

CHEBI ID

CHEBI:84660 (3)
CHEBI:84661 (3)
CHEBI:84662 (3)
CHEBI:84665 (3)
CHEBI:85725 (3)
CHEBI:85726 (3)
CHEBI:85729 (3)
CHEBI:85734 (3)
CHEBI:85736 (3)
CHEBI:85740 (3)
CHEBI:85741 (3)
CHEBI:85753 (3)
CHEBI:85832 (3)
CHEBI:85871 (3)
CHEBI:85875 (3)
CHEBI:85876 (3)
CHEBI:77447 (2)
CHEBI:84659 (2)
CHEBI:85731 (2)
CHEBI:85742 (2)
CHEBI:85743 (2)
CHEBI:85747 (2)
CHEBI:85748 (2)
CHEBI:85749 (2)
CHEBI:85750 (2)
CHEBI:85751 (2)
CHEBI:85752 (2)
CHEBI:85754 (2)
CHEBI:85837 (2)
CHEBI:85842 (2)

Metabolite Name

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate (1)
(9Z)-heptadecenoate (1)
CE(16:1) (1)
CE(17:1) (1)
Cer(d18:0/23:0) (1)
Cer(d40:1) (1)
Cer(d40:2) (1)
Cer(d41:1) (1)
Cer(d41:2) (1)
Cer(d42:1) (1)
Cer(d42:2) (1)
PG(35:3) (1)
TAG(46:0) (1)
TAG(46:1) (1)
TAG(46:2) (1)
TAG(48:0) (1)
TAG(48:1) (1)
TAG(48:2) (1)
TAG(48:3) (1)
TAG(50:1) (1)
TAG(50:2) (1)
TAG(50:3) (1)
TAG(50:4) (1)
TAG(52:2) (1)
TAG(52:3) (1)
TAG(52:4) (1)
TAG(52:5) (1)
TAG(52:6) (1)
TAG(54:5) (1)
TAG(54:6) (1)

First Public Date

2026 (4)

Study type

Transcription profiling by array (6)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
High-throughput sequencing (1)
ChIP-chip by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2023 (7)
2015 (6)
2022 (5)
2017 (4)
2014 (3)
2013 (3)
2011 (3)
2010 (3)
2008 (3)
2025 (3)
2021 (3)
2024 (2)
2020 (2)
2016 (1)
2012 (1)
2007 (1)
2006 (1)
2004 (1)
2026 (1)
2019 (1)
2018 (1)
2009 (1)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
CECAD, University of Cologne (4)
Vice Dean, Faculty of Medical and Human Sciences Section Lead, Infrastructure and Technology, Manchester Academic Health Science Centre University of Manchester Wolfson Molecular Imaging Centre Manchester M20 3LJ (4)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (3)
University of Edinburgh (3)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (2)
KU Leuven - Department of Oncology - Laboratory for Disease Mechanisms in Cancer (2)
Max Planck Institute for Molecular Genetics Department of Genome Regulation Ihnestraße 63-73 14195 Berlin, Germany (2)
The Walter and Eliza Hall Institute (2)
University of Cologne, Germany (2)
WEHI (2)
Assistant Professor DEPARTMENT OF OBSTETRICS & GYNAECOLOGY Faculty of Medicine The University of HOng Kong (1)
Associate Professor, Dept. of Food Science Adjunct Associate Professor, Dept. of Microbiology University of Massachusetts Amherst Adjunct Associate Professor, Dept. of Microbiology & Physiological Systems University of Massachusetts Medical School selalab.org 413.545.1010 (1)
Associate Professor, Stem Cells and Regenerative Medicine Centre, Yenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, Karnataka (State),India (C) (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Boston University School of Medicine (1)
Bristol Medical School, University of Bristol (1)
CVRTI, University of Utah (1)
Center for Integrative Genomics, University of Lausanne, Switzerland (1)
Center for Integrative Physiology and Molecular Medicine (CIPMM), Bld. 48, Saarland University (1)
Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201, USA (1)
Chair of Immunobiology, Yale University (1)
Charles Perkins Centre, School of Life and Environmental Sciences, University of Sydney, Sydney, Australia. (1)
College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (1)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
D-BSSE, ETH Zürich (1)
David A. Sela Associate Professor, Dept. of Food Science Adjunct Associate Professor, Dept. of Microbiology University of Massachusetts Amherst Adjunct Associate Professor, Dept. of Microbiology & Physiological Systems University of Massachusetts Medical School selalab.org 413.545.1010 (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Anatomy and Developmental BiologyMonash University, Clayton, Victoria, Australia; Development and Stem Cells Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia. Alexander N Combes alex.combes@monash.edu. David J Nikolic-Paterson david.nikolic-paterson@monash.edu. (1)
Department of Biochemistry and Department of Oncology, Schulich School of Medicine & Dentistry, Western University, London, Ontario, Canada, N6A 5C1 (1)

Tags

xref:PubMed:33911273 (3)

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2019 Brecht et al. RAG1 vAbl BioID LC-MS/MS

To identify mechanisms that regulate V(D)J recombination, we used proximity-dependent biotin identification to analyze the interactomes of full length and truncated forms of RAG1 in pre-B cells. This revealed an association of RAG1 with numerous nucleolar proteins in a manner dependent on amino acid...

ORGANISM(S): Mus musculus (Mouse)

2020-04-02 | PXD016221 | Pride

Microbiome-derived hydroxyphenyl propanoate promotes antitumour immunity by enhancing Gasdermin D cleavage in tumour-associated myeloid cells

The microbiome has a significant impact on immune health and response to immune-stimulating treatments, including cancer immunotherapy. However, the molecular mechanisms by which commensal microbes influence cancer immunology remain poorly understood. Here, we report on the discovery of a class of m...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD045790 | Pride

Tmt Gasdermin d Hydroxuphenyl pyruvate Thermal profiling Thp1-dual cells

Synergism in the effect of prior jasmonic acid application on herbivore-induced volatile emission by Lima bean plants: transcription of a monoterpene synthase gene and volatile emission.

Not available

S-EPMC4144767 | biostudies-literature

Tan SingleCell

Transcriptional profiling was performed on 18 cells isolated from libraries produced by culture of cells extracted from neonatal foreskin. The profiling was exploratory in nature, with no pre-defined sample phenotypes except for origin of the cells. Post-hybridization, the single-cell libraries were...

ORGANISM(S): Homo sapiens

2013-02-18 | E-MTAB-824 | biostudies-arrayexpress

Cynoscion nebulosus isolate:fCynNeb1

Cynoscion nebulosus (spotted seatrout) genome, fCynNeb1, haplotype 1

PRJNA1529269 | ENA

Cynoscion nebulosus isolate:fCynNeb1

Cynoscion nebulosus (spotted seatrout) genome, fCynNeb1, haplotype 2

PRJNA1529268 | ENA

Cynoscion nebulosus isolate:fCynNeb1

Cynoscion nebulosus (spotted seatrout) genome, fCynNeb1, sequence data

PRJNA1529270 | ENA

Cynoscion nebulosus (spotted seatrout) genome, fCynNeb1