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ProteomicsComparison of DDA (Orbitrap Exploris 480) and DIA (timsTOF Pro 2) phosphoproteomics
In this experiment, 3 replicate phosphopeptide enrichments using titanium dioxide spin tips (GL Science) of the filamentous fungus Magnaporthe oryzae were measured on a) Orbitrap Exploris 480 in DDA and b) timsTOF Pro 2 in DIA for comparison of model/acquisition type differences.
ORGANISM(S): Cellular Organisms 
2023-04-13 | PXD038605 | JPOST Repository
TranscriptomicsCharacterization of Nicotiana attenuata plants with reduced expression of HSPRO (ir-hspro plants).
Identification of transcripts that change expression in roots of Nicotiana attenuata plants with reduced expression of HSPRO and in association with Piriformospora indica. Gene expression in roots of Nicotiana attenuata wild type and ir-hspro seedlings was measured at 14 days after inoculation with ...
ORGANISM(S): Nicotiana attenuata 
2012-11-06 | E-GEOD-35086 | biostudies-arrayexpress
TranscriptomicsTranscriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths
Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths 3 biological replicates per stage. The three stages are: pre-penetration appressoria (PA), early biotrophic phase (BP), and the switch from biotrophy to necrotrophy (NP). Each biological r...
ORGANISM(S): Glomerella graminicola 
2012-06-04 | E-GEOD-34632 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Physcomitrella patens response to fungal exudates
Physcomitrella patens gametophores were treated with exudates from the arbuscular mycorrhiza fungi (AMF) Rhizophagus irregularis (formerly known as Glomus intraradices) and Gigaspora margerita for one hour and 24 hours.
ORGANISM(S): Physcomitrella patens 
2014-11-10 | E-MTAB-3081 | biostudies-arrayexpress
TranscriptomicsHost-based markers for the early stage of infection by the grapevine trunk pathogen Neofusicoccum parvum
In the vineyard, symptoms of the grapevine trunk disease Botryosphaeria dieback do not appear until 1 or 2 years after the causal fungus Neofusicoccum parvum establishes a necrotic canker in the permanent woody structure of the vine. There are preventative management practices, but growers tend to ...
ORGANISM(S): Vitis vinifera 
2015-03-24 | E-GEOD-58653 | biostudies-arrayexpress
TranscriptomicsSpecies- and condition-specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis
Although Candida albicans and Candida dubliniensis are most closely related, both species significantly behave differently with respect to morphogenesis and virulence. In order to gain further insight into the divergent routes for morphogenetic adaptation in both species, we investigated qualitative...
ORGANISM(S): Candida albicans 
2013-04-17 | E-GEOD-41749 | biostudies-arrayexpress
ProteomicsOuter membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440
Lignin modifications and the exoproteome of three aromatic catabolic bacteria: Pseudomonas putida KT2440, Rhodoccocus jostii RHA1, and Amycolatopsis sp. ATCC 39116. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MSGF+ and abundances inferred using PNNL's DMS an...
ORGANISM(S): Pseudomonas Putida Kt2440 (ncbitaxon:160488) Amycolatopsis Sp. Atcc 39116 (ncbitaxon:385957) Rhodococcus Jostii Rha1 (ncbitaxon:101510) 
2019-11-01 | MSV000084524 | MassIVE
TranscriptomicsDissection of the F. graminearum transcriptome in response to an active or passive host identifies new pathogen-specific genes.
Comparing RNA Seq- Data of all three sample types- pathogenic growth, saprophytic growth on same plant substrate, axenic growth under starvation after consumption of the mycotoxin inducing nitrogen source L-ornithine- allows to distinguish between genes whose transcription is affected by nutrient st...
ORGANISM(S): Fusarium graminearum PH-1 
2016-04-01 | E-GEOD-72124 | biostudies-arrayexpress
TranscriptomicsSystems toxicology assessment of a representative e-liquid formulation using human primary bronchial epithelial cells
The development of reduced-risk products is aimed at providing adult smokers, who are unable to quit, with alternatives to cigarettes that present less risk of harm and smoking-related disease. The use of flavors in the development of these reduced-risk products fulfils an important role in product ...
ORGANISM(S): Homo sapiens 
2019-11-01 | E-MTAB-7748 | biostudies-arrayexpress
UnknownFive insights from the Global Burden of Disease Study 2019.
Not available
S-EPMC7116361 | biostudies-literature
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