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Genomics
Test sample for pipline
PRJNA1332546 | ENA
TranscriptomicsA comparative study of cellular diversity between the Xenopus pronephric and mouse metanephric nephron
To characterize the cellular makeup of the Xenopus kidney, we dissected, dissociated, then processed X. laevis pronephric kidneys through the 10X Genomics single-cell pipline.
ORGANISM(S): Xenopus laevis 
2022-09-04 | GSE212518 | GEO
Genomicsena-DATASET-RTL-25-02-2014-14:37:49:104-88 - samples
Fernandez-Cuesta et al., RNAseq data Pipline
EGAD00001000746 | EGA
TranscriptomicsRNA sequencing of Patient-Derived Xenografts
Goal: Comparison of mRNA expression profiles in patient-derived xenograft primary tumors Methods: RNA sequencing performed at the High-Throughput Genomics and Bioinformatics Analysis Core at the University of Utah. Detailed procedures available in methods and DNA processing pipline sections. Results...
ORGANISM(S): Homo sapiens 
2023-10-10 | GSE244967 | GEO
TranscriptomicsRNA sequencing of mutant AKT tumors
Goal: Comparison of mRNA expression profiles in primary tumors based on activation of different AKT paralogs Methods: RNA sequencing performed at the High-Throughput Genomics and Bioinformatics Analysis Core at the University of Utah. Detailed procedures available in methods and DNA processing pipli...
ORGANISM(S): Mus musculus 
2018-11-21 | GSE122781 | GEO
TranscriptomicsIGF2 shRNA knockdown in the colorectal cancer (CRC) cell line SW480
In order to identify gene expression changes associated with the deregulated of IGF2, Doxycylin inducible empty vector and IGF2 shRNA permanent cell lines were generated by lentivral transduction in the colorectal cancer (CRC) cell line SW480 and selected with puromycin. For microarray analysis, bot...
ORGANISM(S): Homo sapiens 
2016-04-30 | E-MTAB-3786 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis in C.elegans from Parental P0 to F3 generations under hypoxic stress in both WT and hrde-1 mutant [RNA-seq]
The goal of RNA-seq is to identify the differentially expressed genes in the wild-type (WT) and hrde-1 mutant of C.elegans at the normoxia reared and hypoxia treatment conditions at P0 generation, and those maintained dysregulated genes in F1, F2 and F3 generation. Two biological replicates were ass...
ORGANISM(S): Caenorhabditis elegans 
2022-12-13 | GSE188269 | GEO
UnknownscSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data.
Not available
S-EPMC9991884 | biostudies-literature
Genomics
Negative controlls
PRJNA437551 | ENA
UnknownA multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis.
Not available
S-EPMC3981938 | biostudies-literature
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