Plant-virus interactions

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Unknown (772)
Transcriptomics (115)
Genomics (79)
Proteomics (16)
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Organisms

Arabidopsis thaliana (31)
Homo sapiens (26)
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Solanum tuberosum (3)
Olea europaea (2)
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Streptococcus pneumoniae (2)
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Organisms

Nicotiana benthamiana (9)
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bovine metagenome (1)
sludge metagenome (1)
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Repository

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pride (12)
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Tissue

Leaf (3)
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Technology Type

Mass Spectrometry (12)
Shotgun proteomics (7)
Mass spectrometry (3)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2000 (10)
Illumina HiSeq 1500 (7)
GenePix Professional 4200A [Axon Instruments] (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
QuantSeq 3’ mRNA-Seq Library Prep Kit FWD (Lexogen Gmbh, Vienna, Austria) (1)
Illumina HiSeq 2500 (1)
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Publication Date

2013 (18)
2012 (17)
2014 (15)
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2015 (11)
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2011 (8)
2008 (8)
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2010 (7)
2009 (5)
2018 (4)
2005 (3)
2026 (3)
2024 (3)
2022 (2)
2017 (2)
2020 (2)
2007 (1)
2023 (1)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
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2AAA_HUMAN (1)
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6PGL_HUMAN (1)
9606.ENSP00000291295 (1)
9606.ENSP00000322421 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)
9606.ENSP00000349467 (1)
9606.ENSP00000352119 (1)
9606.ENSP00000352627 (1)
9606.ENSP00000355778 (1)
9606.ENSP00000358154 (1)
9606.ENSP00000358160 (1)
9606.ENSP00000362621 (1)
9606.ENSP00000364802 (1)
9606.ENSP00000366679 (1)
9606.ENSP00000366956 (1)

CHEBI ID

CHEBI:16112 (2)
CHEBI:191678 (1)
CHEBI:191673 (1)
CHEBI:191671 (1)
CHEBI:191666 (1)
CHEBI:176106 (1)
CHEBI:191660 (1)
CHEBI:191659 (1)
CHEBI:189030 (1)
CHEBI:191656 (1)
CHEBI:191645 (1)
CHEBI:191642 (1)
CHEBI:191633 (1)
CHEBI:191630 (1)
CHEBI:186790 (1)
CHEBI:191605 (1)
CHEBI:191602 (1)
CHEBI:175714 (1)
CHEBI:191596 (1)
CHEBI:191590 (1)
CHEBI:176182 (1)
CHEBI:191583 (1)
CHEBI:191580 (1)
CHEBI:187811 (1)
CHEBI:188374 (1)
CHEBI:191564 (1)
CHEBI:191560 (1)
CHEBI:191557 (1)
CHEBI:189028 (1)
CHEBI:191520 (1)

Metabolite Name

Isoscoparin 2''-(6-(E)-feruloylglucoside) 4'-glucoside (2)
Tetramethylquercetin 3-rutinoside (2)
2alpha-(3-Hydroxypropyl)-1alpha,25-dihydroxy-19-norvitamin D3 (2)
Bn-NCC-2 (2)
Soyasapogenol B 24-O-b-D-glucoside (2)
Smilanippin A (2)
Mono-methyl-adipate (2)
D-Xylono-1,5-lactone (2)
(1(10)E,4a,5E)-1(10),5-Germacradiene-12-acetoxy-4,11-diol (2)
(1'R)-Nepetalic acid (2)
Physagulin G (2)
D-1,5-Anhydrofructose (2)
4-Hydroxycyclohexylcarboxylic acid (2)
Muricatacin (2)
(Z)-3-Methyl-3-decenoic acid (2)
(x)-2-Heptanol glucoside (2)
Schidigeragenin B (2)
Isopropyl apiosylglucoside (2)
2-Aminomuconic acid semialdehyde (2)
Furanogermenone (2)
6-beta-hydroxydexamethasone (2)
Botryodiplodin (2)
Polyoxyethylene 40 monostearate (2)
Theaflagallin (2)
L-Citronellol glucoside (2)
Cadabicine methyl ether (2)
Blumenol C glucoside (2)
2-O-alpha-D-Galactopyranosyl-1-deoxynojirimycin (2)
Blumenol C O-[rhamnosyl-(1->6)-glucoside] (2)
Phytocassane B (2)

First Public Date

2026 (12)
2014 (11)
2025 (8)
2019 (6)
2024 (5)
2022 (5)
2020 (5)
2013 (5)
2021 (4)
2023 (2)
2017 (1)
2016 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
CR University of Grenoble-Alpes, Institute for Advances Biosciences, Inserm U1209, CNRS UMR 5309, Grenoble, France (1)
Department of Plant Molecular Genetics, Centro Nacional de Biotecnología (CNB-CSIC),Madrid, Spain. (1)
Institute of Plant Protection – National Research Institute, Department of Entomology, Animal Pests and Biotechnology, Władysława Węgorka 20, 60-318 Poznań, Poland (1)
KU Leuven; Department of Biology; Unit: Molecular Biotechnology of Plants and Micro-Organisms: Rice (1)
Laboratory of Plant Defense Proteins, Department of Biochemistry and Molecular Biology, Federal University of Ceara, Fortaleza, Brazil. (1)
Proteomics Unit, Department of Biochemistry, Institute of Chemistry, Federal University of Rio de Janeiro, Av Athos da Silveira Ramos, 149, CT- A-542, Cidade Universitária 21941-909 Rio de Janeiro, RJ, Brazil (1)
Proteomics and Metabolomics Facility (1)
US Department of Agriculture, Agricultural Research Service (USDA-ARS), Boyce Thompson Institute, Cornell University (1)
USDA-ARS, Boyce Thompson Institute, Cornell University (1)
United States Department of Agriculture-Agricultural Research Service (USDA-ARS); Boyce Thompson Institute; Cornell University (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

viruses (1)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (19)
Cell line - High-throughput sequencing (8)
RNA-seq of non coding RNA (8)
ChIP-seq (7)
Unknown experiment type (4)
Other (4)
Capture-C (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (79)
2025 (76)
2021 (73)
2024 (73)
2020 (72)
2023 (66)
2019 (52)
2016 (45)
2017 (43)
2014 (43)
2018 (40)
2015 (39)
2013 (36)
2012 (34)
2011 (30)
2010 (21)
2009 (13)
2008 (13)
2026 (8)
2007 (8)
2005 (5)
2001 (3)
2006 (2)
2000 (2)
2003 (1)

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Comparative Metabolomic Profiling of Compatible and Incompatible Interactions Between Potato and Phytophthora infestans

Late blight is one of the main biological stresses limiting the potato yield; however, the biochemical mechanisms underlying the infection process of Phytophthora infestans remain unrevealed. In this study, the late blight-resistant potato cultivar Ziyun No.1 (R) and the susceptible cult...

2022-05-20 | MTBLS4365 | MetaboLights

Comparative transcript profiling of plant virus synergism

Many virus diseases of economic importance to agriculture result from mixtures of different pathogens invading the host at a given time. This contrasts with the relatively scarce studies available on the molecular events associated with virus-host interactions in mixed infections. In comparison to s...

ORGANISM(S): Nicotiana benthamiana

2010-05-16 | E-GEOD-15538 | biostudies-arrayexpress

Evaluation of a bead-free immunoprecipitation technique coupled with tandem mass spectrometry for identification of plant-virus protein interactions (DeBlasio_JBT_2017)

Potato leafroll virus (PLRV) is an aphid-borne, RNA virus in the Luteoviridae that causes significant loss to potato production worldwide. Precision methods to block virus infection in plants or the transmission of a virus by the insect represent new approaches to virus disease management and requir...

ORGANISM(S): Nicotiana benthamiana

2018-10-24 | PXD006338 | Pride

Co-evolution between Grapevine rupestris stem pitting-associated virus and Vitis vinifera L. induces a decrease in defence responses and physiological performance associated with an increase in photosynthesis-related gene transcription

Grapevine rupestris stem pitting-associated virus (GRSPaV) is a widespread virus affecting Vitis spp. Although it has established a compatible viral interaction in Vitis vinifera L. without the development of phenotypic alterations, it can occur as distinct variants that show different symptoms in d...

ORGANISM(S): Vitis vinifera

2012-10-05 | E-GEOD-36632 | biostudies-arrayexpress

Comparative transcriptomic responses to compatible and incompatible plant-virus interactions that lead to cell death

Hypersensitive response-related programmed cell death (PCD) has been extensively analyzed in various plant–virus interactions. However, little is known about changes in gene expression associated with cell death caused by compatible viruses. The synergistic interaction of Potato virus X (PVX) with P...

ORGANISM(S): Nicotiana benthamiana

2012-02-02 | E-GEOD-34841 | biostudies-arrayexpress

Increased cysteine protease activity in the aphid midgut decreases the transmission efficiency of a circulative plant virus

Aphids, sap-sucking insects in the order Hemiptera, are among the most prolific insect vectors of plant viruses Plant viruses from the family Luteoviridae are transmitted exclusively by aphids in a circulative manner and cause significant crop yield losses. Circulative plant viruses must cross the a...

ORGANISM(S): Myzus persicae persicae

2016-12-14 | PXD004893 | Pride

Host-pathogen interactions Lc-msms Luteoviridae Potato leafroll virus 2d-dige

Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks [triple_stress]

Considering global climate changes, incidences of combined drought and heat stress are likely to increase in the future and will considerably influence plant-pathogen interactions. Until now, little is known about plants exposed to simultaneously occurring abiotic and biotic stresses. To shed some l...

ORGANISM(S): Arabidopsis thaliana

2013-06-10 | E-GEOD-46757 | biostudies-arrayexpress

Simultaneous application of heat, drought and virus to Arabidopsis thaliana plants reveals significant shifts in signaling networks [triple_wdh]

ORGANISM(S): Arabidopsis thaliana

2013-06-10 | E-GEOD-46759 | biostudies-arrayexpress

Dissecting virus-plant interactions through proteomics approaches.

Not available

S-EPMC3769790 | biostudies-literature

RNA-Seq reveals virus-virus and virus-plant interactions in nature.

Not available

S-EPMC5854034 | biostudies-literature

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