Plasmid restriction

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Unknown (612)
Transcriptomics (117)
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Proteomics (25)
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Organisms

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synthetic construct (1)
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Organisms

Homo sapiens (10)
Escherichia coli (4)
Streptococcus pneumoniae R6 (3)
Mus musculus (3)
Acinetobacter baumannii (2)
Rickettsia amblyommatis str. AaR/SC (1)
Gluconobacter oxydans 621H (1)
Rhizoctonia solani AG-3 Rhs1AP (1)
Mycoplasma mycoides subsp. capri str. GM12 (1)
Leptospira sp. (1)
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Enterococcus faecalis OG1RF (1)
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Paenibacillus salivarius (1)
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Arabidopsis thaliana (1)
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Repository

biostudies-arrayexpress (117)
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Disease

Normal (1)
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Technology Type

Mass Spectrometry (23)
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Affinity purification coupled with mass spectrometry proteomics (4)
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Instrument Platform

NextSeq 500 (8)
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2012 (17)
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2013 (12)
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2009 (7)
2007 (7)
2006 (7)
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2011 (6)
2015 (5)
2008 (5)
2026 (5)
2019 (3)
2016 (2)
2004 (2)
2018 (1)
2005 (1)

CHEBI ID

CHEBI:16027 (3)
CHEBI:18257 (3)
CHEBI:30769 (3)
CHEBI:15354 (2)
CHEBI:15422 (2)
CHEBI:15428 (2)
CHEBI:15713 (2)
CHEBI:15741 (2)
CHEBI:16335 (2)
CHEBI:16449 (2)
CHEBI:16708 (2)
CHEBI:16761 (2)
CHEBI:16811 (2)
CHEBI:16831 (2)
CHEBI:17154 (2)
CHEBI:17345 (2)
CHEBI:17533 (2)
CHEBI:17568 (2)
CHEBI:17748 (2)
CHEBI:17750 (2)
CHEBI:17752 (2)
CHEBI:17821 (2)
CHEBI:17822 (2)
CHEBI:18012 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)

Metabolite Name

AMP (2)
Alanine (2)
Asparagine (2)
Aspartate (2)
Fumarate (2)
Glycine (2)
Leucine (2)
Malate (2)
Ornithine (2)
Proline (2)
Serine (2)
Threonine (2)
Tryptophan (2)
Tyrosine (2)
Valine (2)
(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPI (20:4) (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)

First Public Date

2013 (9)
2026 (7)
2025 (7)
2024 (7)
2023 (6)
2021 (6)
2014 (6)
2022 (4)
2019 (2)
2016 (2)
2020 (1)
2018 (1)
2017 (1)
2015 (1)

Classification

bacteria (16)
viruses (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (16)
Other (10)
Methylation profiling by high throughput sequencing (5)
Hi-C (4)
DNA-seq (4)
ChIP-chip by tiling array (3)
RNA-seq of non coding RNA (3)
High-throughput sequencing (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
ATAC-seq (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
RIP-seq (1)
ChIP-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (42)
2015 (42)
2023 (40)
2012 (40)
2013 (38)
2017 (37)
2014 (37)
2019 (35)
2021 (34)
2020 (34)
2018 (31)
2022 (30)
2011 (28)
2024 (27)
2010 (26)
2016 (24)
2007 (21)
2006 (19)
2009 (18)
2008 (18)
2003 (17)
1998 (17)
2004 (16)
2005 (15)
2001 (11)
2000 (10)
2002 (9)
1999 (7)
1997 (2)
2026 (1)

Lab affiliation

Civil Aviation Medicine Center, Civil Aviation Administration of China (1)
Department of Fundamental Microbiology, Faculty of Biology and Medicine, University of Lausannne, Bâtiment Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland (1)
Department of Neurology, School of Medicine, Yale University, New Haven (CT), USA (1)
Department of Oncology, University Children's Hospital Zurich (1)
Head of Proteomics (1)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (1)
Institute of Molecular Biology (IMB), Chromatin Biology & Proteomics, Mainz, Germany Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität, Mainz, Germany (1)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences (1)
Institute of Pharmaceutical Sciences, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland (1)
Instituto de Biotecnología y Biología Molecular Facultad de Ciencias Exactas. Universidad Nacional de La Plata. CCT La Plata CONICET Calle 49 y 115 1900. La Plata Argentina (1)
Laboratory of regenerative biomedicine, Institute of Cytology of the Russian Academy of Science (1)
Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany (1)
Professor of Biochemistry, Faculty of Biology, Medicine & Health, Wellcome Trust Centre for Cell-Matrix Research, University of Manchester, United Kingdom (lab head) (1)
Proteomic Facility, Institut Jacques Monod UMR7592 (CNRS and Université Paris Cité) (1)
Research Centre for Applied Molecular Oncology, Masaryk Memorial Cancer Institute, Zluty Kopec 7, 65653 Brno, Czech Republic (1)
Research Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria (1)
SUN YAT-SEN UNIVERSITY (1)
Senior Lecturer, Wellcome Trust Centre for Cell-Matrix Research, Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 (1)
Skolkovo Institute of Science and Technology, Moscow, Russia (1)
The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Tianjin Medical University, Tianjin, China (1)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France ( lab head ) (1)
University of Southern California (1)

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Transcription profiling of E. coli cells during cell death programmed by a restriction-modification system

Genetically programmed deaths play important roles in the biology of unicellular prokaryotic cells. Some gene complexes force their maintenance on the host bacterial cells by killing cells that have lost them. This form of programmed death called post-segregational killing or genetic addiction is br...

ORGANISM(S): Escherichia coli

2009-07-04 | E-GEOD-7326 | biostudies-arrayexpress

Total proteome of AB1157 with RA-inducing plasmid pTn5053

Bacterial defence systems are tightly regulated to avoid autoimmunity. In Type I restriction-modification (R-M) systems, a specific mechanism called restriction alleviation (RA) controls the activity of the restriction module. In the case of the Escherichia coli Type I R-M system EcoKI, RA proceeds ...

ORGANISM(S): Escherichia coli

2024-06-23 | PXD050621 | Pride