Platform comparison

Show results for

Unknown (3419)
Transcriptomics (1191)
Genomics (1180)
Proteomics (421)
Metabolomics (209)
Methylation profiling (18)
Models (15)
Other (11)
Clinical (6)
Genomic (3)

Organisms

Homo sapiens (612)
Mus musculus (242)
Rattus norvegicus (51)
Arabidopsis thaliana (33)
Bos taurus (28)
Sus scrofa (27)
Drosophila melanogaster (25)
Saccharomyces cerevisiae (20)
Oncorhynchus mykiss (15)
Canis lupus familiaris (14)
Oryza sativa (12)
Danio rerio (12)
Zea mays (9)
Caenorhabditis elegans (8)
Pseudomonas aeruginosa (8)
synthetic construct (8)
Sparus aurata (6)
Candida albicans (5)
Methanosarcina barkeri (4)
Boehmeria nivea (4)
Thermus thermophilus HB8 (4)
Escherichia coli K-12 (4)
Brucella canis (3)
Azoarcus sp. (3)
Lactococcus lactis (3)
Vitis vinifera (3)
mixed sample (3)
Methanothermobacter thermautotrophicus (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)

Organisms

Homo sapiens (376)
Mus musculus (147)
Arabidopsis thaliana (21)
Rattus norvegicus (19)
Bos taurus (18)
Sus scrofa (15)
Drosophila melanogaster (11)
Canis lupus familiaris (9)
Equus caballus (7)
Oryza sativa (7)
Oncorhynchus mykiss (5)
Ovis aries (5)
Danio rerio (4)
Gallus gallus (4)
Zea mays (4)
Enterobacter ludwigii (3)
Thermus thermophilus HB8 (3)
Anopheles gambiae (3)
Pantoea vagans (3)
Pseudomonas aeruginosa (3)
Saccharomyces cerevisiae (3)
Escherichia coli (3)
soil metagenome (3)
Betula luminifera (2)
Pelargonium x hortorum (2)
Ursus americanus (2)
Sparus aurata (2)
Acetivibrio thermocellus ATCC 27405 (2)
Ruditapes philippinarum (2)
Limosilactobacillus reuteri subsp. reuteri F275 (2)

Repository

ENA (1026)
biostudies-arrayexpress (958)
geo (384)
pride (384)
MetaboLights (204)
EGA (34)
MassIVE (23)
BioModels (15)
GNPS (4)
iProX (4)
jPOST (4)
PeptideAtlas (4)
dbGaP (3)
EVA (1)
MetabolomicsWorkbench (1)
PanoramaPublic (1)

Tissue

Cell culture (104)
Brain (31)
Epithelial cell (24)
Blood plasma (19)
Permanent cell line cell (14)
Cell suspension culture (13)
Blood (12)
Kidney (11)
Macrophage (9)
Liver (9)
Lung (8)
T cell (8)
Fibroblast (7)
Blood cell (7)
Plant cell (6)
Blood serum (6)
Spleen (6)
Early embryonic cell (5)
Heart (5)
Others (4)
Tear (4)
Seedling (4)
Cerebrospinal fluid (4)
Skin (4)
Stem cell (4)
Testis (4)
Erythrocyte (4)
B cell (4)
Saliva (4)
Blood (1)

Disease

Breast cancer (13)
Disease free (8)
Normal (6)
Parkinson's disease (5)
Colon cancer (5)
Leukoencephalopathy with vanishing white matter (3)
Skin cancer (3)
Non-small cell lung carcinoma (3)
Cervix carcinoma (3)
Wounds and Injuries (3)
Cancer (2)
Adenocarcinoma (2)
Renal cell carcinoma (2)
Functional intestinal disorder, unspecified (2)
Colorectal Neoplasms (2)
Lyme disease (2)
Multiple sclerosis (1)
HPV positive (1)
Not applicable (1)
Ischaemia reperfusion injury (1)
Non-metastatic melanoma (1)
No local recurrence (1)
Breast adenocarcinoma (1)
Neuroblastoma (1)
Acute myelomonocytic leukaemia (1)
Acute lymphoblastic leukemia (1)
Invasive lobular carcinoma (1)
Prostate carcinoma (1)
Colorectal cancer liver metastases (CRLM) (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (385)
Shotgun proteomics (213)
Mass spectrometry (174)
Bottom-up proteomics (80)
Data-dependent acquisition (45)
Affinity purification coupled with mass spectrometry proteomics (37)
Data-independent acquisition (30)
Mass spectrometry assay (26)
Gel-based experiment (20)
SWATH MS (13)
NMR spectroscopy (7)
HDMSE (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Affinity proteomics (5)
Top-down proteomics (4)
Olink affinity proteomics (3)
MSE (3)
SomaScan affinity proteomics (2)
All-ion fragmentation (2)
SRM/MRM (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 2500, ILLUMINA (1)
HumanCore-24 BeadChip, HumanOmniExpressExome-8 BeadChip (1)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Complete Genomics, unspecified (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
ESI (1)
Metaproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (33)
Illumina HiSeq 2500 (21)
NextSeq 500 (19)
Illumina HiSeq 2000 (18)
Illumina HiSeq 4000 (16)
Illumina NovaSeq X (6)
BGISEQ-500 (5)
HiSeq X Ten (4)
Illumina HiSeq 1500 (4)
NextSeq 550 (4)
Scanning hardware (3)
NextSeq 2000 (3)
Complete Genomics (2)
Illumina Genome Analyzer IIx (2)
G2565BA DNA microarray scanner [Agilent] (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
Illumina HiSeq 2000 platform (1)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
Macbook Pro 2018 (1)
BRB-seq tool and pipeline (1)
NucleoSpin RNA kit (Macherey-Nagel) (1)
Gilson Minipuls 3 (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
High-performance computing workstation (1)

Publication Date

2010 (165)
2015 (142)
2026 (138)
2013 (128)
2022 (119)
2021 (117)
2024 (116)
2025 (116)
2012 (112)
2011 (99)
2014 (94)
2020 (89)
2023 (84)
2019 (76)
2008 (74)
2016 (71)
2017 (60)
2009 (44)
2007 (39)
2018 (37)
2006 (32)
2005 (20)
2004 (9)
2003 (1)

UNIPROT ID/AC

Q9H0Z9 (4)
Q6ZS81 (4)
Q02556 (4)
Q9UIQ6 (4)
Q9NP77 (4)
Q9Y3P8 (4)
Q9Y5A9 (4)
Q9Y4Y9 (4)
Q9UJA5 (4)
Q9UHR5 (4)
Q9P289 (4)
Q9H8Y5 (4)
Q9H3P2 (4)
Q9BZK7 (4)
Q9BX40 (4)
Q99543 (4)
Q96P16 (4)
Q96CW5 (4)
Q9Y6E0-2 (4)
Q9Y6E0 (4)
Q9Y606 (4)
Q9UJW0-3 (4)
Q9UJW0 (4)
Q9UBB4 (4)
Q9NUQ3 (4)
Q9NRH3 (4)
Q9NR56 (4)
Q9BTT0 (4)
Q9BRP8-2 (4)
Q9BRP8 (4)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000247315 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17154 (78)
CHEBI:15927 (57)
CHEBI:15698 (56)
CHEBI:15741 (48)
CHEBI:15429 (5)
CHEBI:50606 (5)
CHEBI:16892 (5)
CHEBI:29177 (5)
CHEBI:29167 (5)
CHEBI:15934 (5)
CHEBI:29154 (5)
CHEBI:18421 (5)
CHEBI:18191 (5)
CHEBI:17158 (5)
CHEBI:17245 (5)
CHEBI:29033 (5)
CHEBI:15811 (5)
CHEBI:18372 (5)
CHEBI:17001 (5)
CHEBI:37737 (5)
CHEBI:17509 (5)
CHEBI:16551 (5)
CHEBI:16828 (5)
CHEBI:15380 (5)
CHEBI:15971 (5)
CHEBI:16240 (5)
CHEBI:17203 (5)
CHEBI:17808 (5)
CHEBI:16467 (5)
CHEBI:18019 (5)

Metabolite Name

Leucine (73)
Glycine (73)
Alanine (73)
Valine (72)
Serine (72)
Isoleucine (72)
Tyrosine (71)
Threonine (71)
Proline (71)
Phenylalanine (71)
Methionine (71)
Lysine (71)
Histidine (71)
Choline (71)
Asparagine (71)
Arginine (71)
Tryptophan (70)
Taurine (70)
Glutamine (70)
Cysteine (70)
Allantoin (70)
5-oxoproline (69)
Spermidine (69)
Myo-inositol (69)
Uridine (69)
Pseudouridine (69)
Inosine (69)
Glycerophosphoethanolamine (69)
Glutamate (69)
Cytidine (69)

First Public Date

2014 (237)
2026 (107)
2025 (80)
2024 (75)
2021 (74)
2019 (69)
2022 (63)
2017 (58)
2015 (58)
2023 (50)
2020 (47)
2013 (44)
2018 (38)
2016 (24)
2012 (2)

Modelling Approach

Constraint-based model (8)
Ordinary differential equation model (3)

Study status

Not provided (2)
Recruiting (2)
Completed (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (24)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (7)
Head of the Curie Institute Mass Spectrometry Platform (5)
Alkahest Inc. (4)
Biognosys AG (4)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (3)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (3)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Department of Biochemistry University of Wisconsin-Madison (2)
Proteomics platform Necker, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRSUAR3633, Paris 75015, France. (2)
Team Lead in Proteomics Head of the Proteomics Research Translational Technology Platform UCL Cancer Institute, Paul O’Gorman Building 72 Huntley Street, London, WC1E 6DD, UK (2)
Proteomics Platform cic bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (2)
Molecular Genetics RPTU Kaiserslautern (2)
Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, ProGénoMIX Platform, 30200 Bagnols-sur-Cèze, France. (2)
Department of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", Italy (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
Moffitt Cancer Center (2)
Proteomics Platform Necker, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, Paris 75015, France. (2)
Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy (2)
Department of Plasma Proteins, Sanquin Research, Amsterdam, the Netherlands (2)
Carnegie Mass Spectrometry Facility (2)
Moffitt Cancer Center Tampa, FL, USA (2)
University of Edinburgh (2)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (2)
Johns Hopkins University School of Medicine (2)
Department of Pharmaceutics, School of Pharmaceutical Sciences of Wenzhou Medical University (2)
Manchester Cell-Matrix Centre, Division of Molecular and Cellular Function, FBMH, University of Manchester (1)

Keyword

Cetuximab (1)
Fluorouracil (1)
Circulating tumor cells (1)
CTCs (1)
Automated (1)
Early detection (1)
CRC (1)
Irinotecan (1)

IsPrivate

False (15)

Model Flag

Non Kinetic (6)

Submitter Keywords

FROG (6)

Classification

bacteria (28)
fungi (4)
protozoa (3)
helminths (2)

Modification

2x(15)N labeled L-lysine (2)
57.02146530151367 (1)
15.994915008544922 (1)
0.9840160012245178 (1)
4'-dihydroxyphenylalanine (1)
15.994915 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (560)
RNA-seq of coding RNA (154)
ChIP-seq (34)
Comparative genomic hybridization by array (29)
RNA-seq of non coding RNA (22)
Unknown experiment type (20)
Other (20)
Methylation profiling by array (15)
RNA-seq of coding RNA from single cells (14)
RNA-seq of total RNA (12)
Methylation profiling by high throughput sequencing (11)
ChIP-chip by tiling array (9)
DNA-seq (9)
Genotyping by array (7)
Transcription profiling by RT-PCR (5)
High-throughput sequencing (4)
Animal - High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
ChIP-chip by array (3)
Human - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Ribo-seq (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
Two-color microarray (1)
MeDIP-seq (1)
Human - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
RIP-seq (1)

Release Date

2022 (414)
2021 (363)
2025 (344)
2023 (339)
2020 (301)
2024 (299)
2015 (256)
2019 (244)
2014 (216)
2018 (212)
2016 (205)
2010 (192)
2017 (191)
2013 (176)
2012 (151)
2011 (144)
2008 (85)
2026 (75)
2009 (67)
2007 (46)
2006 (26)
2005 (15)
2004 (13)
2003 (3)

Location

Iran (2)
Singapore (1)
Taiwan (1)
United Kingdom (1)
Japan (1)

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A Cross-Platform Metabolomics Comparison Identifies Serum Metabolite Signatures of Liver Fibrosis Progression in Chronic Hepatitis C Patients

Metabolomics offers new insights into disease mechanisms that is enhanced when adopting orthogonal instrumental platforms to expand metabolome coverage, while also reducing false discoveries by independent replication. Herein, we report the first inter-method comparison when using multisegment injec...

2023-08-22 | MTBLS3111 | MetaboLights

Quick Comparison of Serum Metabolites in SD Rats of Different Sex by Untargeted UPLC-TOFMS and In-house Software Platform

Not available

ORGANISM(S): Rattus norvegicus

ST000237 | MetabolomicsWorkbench

Comparison of popular enrichment methods for untargeted in vitro metabolomics.

Introduction

Untargeted metabolomics is a popular method by which researchers measure a large portion of the metabolites present in a biological system at once. This approach usually results in complex data sets containing tens to hundreds of thousands of observations whi...

2025-08-11 | MTBLS12332 | MetaboLights

Laser-assisted rapid evaporative ionisation mass spectrometry (LA-REIMS) as a metabolomics platform in cervical cancer screening

BACKGROUND: The introduction of high-risk human papillomavirus (hrHPV) testing as part of primary cervical screening is anticipated to improve sensitivity, but also the number of women who will screen positive. Reflex cytology is the preferred triage test in most settings but ha...

2022-02-15 | MTBLS1371 | MetaboLights

Transcriptomic and metabolomic comparison of two Kandelia obovata cultivas in response to cold wave

Temperature is the primary environmental factor that restricts the growth and distribution of mangrove plants. With the escalating severity of global climate change, Kandelia obovata has gained widespread recognition as an ideal species for investigating the response mechanisms of mangroves to cold ...

2024-09-27 | MTBLS9845 | MetaboLights

A Combined LC-MS Metabolomics- and 16S rRNA Sequencing Platform to Assess Interactions between Herbal Medicinal Products and Human Gut Bacteria in Vitro: a Pilot Study on Willow Bark Extract

Herbal preparations are complex mixtures of natural products, many of which are able to reach the distal gut. There, they influence the microbial communities, and can be metabolized into bioactive metabolites. The aim of this study was to establish an interdisciplinary platform to unravel interactio...

2017-12-14 | MTBLS479 | MetaboLights

Comparison of Labeling Methods for gene expression analysis on the NimbleGen platform

Comparison of ds-cDNA, Indirect and Direct Random Labeling Methods for gene expression analysis on the NimbleGen platform. Expression profiles from artemisinic acid-producing S. cerevisiae strain EPY330 and non-producing strain EPY338 are compared for each labeling method tested. The labeling metho...

ORGANISM(S): Saccharomyces cerevisiae

2010-05-19 | E-GEOD-15816 | biostudies-arrayexpress

Cross-Platform Comparison

PRJNA888143 | ENA

Platform Comparison Study

Microarray technology is a powerful tool able to measure RNA expression for thousands of genes at once. Various studies have been published comparing competing platforms with mixed results: some find agreement, others do not. As the number of researchers starting to use microarrays and the number of...

ORGANISM(S): Homo sapiens

2010-06-10 | E-GEOD-2521 | biostudies-arrayexpress

What does next generation Mass Spectrometry offer for proteomics? A comprehensive platform comparison

Next-generation mass spectrometry platforms (Orbitrap Astral, timsTOF Ultra) are reshaping proteomics by enhancing analytical depth and sensitivity. We compared these platforms against Orbitrap Exploris 480 using neonatal mouse lung tissue from a bronchopulmonary dysplasia model (n=12), employing fo...

ORGANISM(S): Mus musculus (Mouse)

2026-04-02 | PXD057442 | Pride

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6475 Results

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Introduction

BACKGROUND: The introduction of high-risk human papillomavirus (hrHPV) testing as part of primary cervical screening is anticipated to improve sensitivity, but also the number of women who will screen positive. Reflex cytology is the preferred triage test in most settings but ha...

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