Pneumococcus - OmicsDI

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Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
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CHEBI ID

CHEBI:60645 (7)
CHEBI:16040 (7)
CHEBI:16708 (7)
CHEBI:15428 (7)
CHEBI:16958 (7)
CHEBI:17268 (7)
CHEBI:17306 (7)
CHEBI:16704 (7)
CHEBI:18012 (7)
CHEBI:32816 (7)
CHEBI:30769 (7)
CHEBI:45931 (6)
CHEBI:17992 (6)
CHEBI:26984 (6)
CHEBI:33508 (6)
CHEBI:16264 (6)
CHEBI:15978 (6)
CHEBI:17050 (6)
CHEBI:17270 (6)
CHEBI:16742 (6)
CHEBI:73685 (6)
CHEBI:16977 (6)
CHEBI:15824 (6)
CHEBI:6650 (6)
CHEBI:30746 (6)
CHEBI:17821 (6)
CHEBI:17154 (6)
CHEBI:30745 (6)
CHEBI:17115 (6)
CHEBI:16235 (6)

Metabolite Name

Oxoglutaric acid (7)
L-Aspartic acid (7)
Caprylic acid (7)
L-Valine (7)
L-Tyrosine (7)
L-Alanine (6)
L-Proline (6)
Maleic acid (6)
L-Threonine (6)
L-Glutamic acid (6)
Citric acid (6)
Linoleic acid (6)
Uridine (6)
L-Isoleucine (6)
L-Leucine (6)
L-Phenylalanine (6)
3-Phosphoglyceric acid (5)
Acetoacetic acid (5)
D-Fructose (5)
D-Glucose (5)
Oxalic acid (5)
Heptadecanoic acid (5)
Beta-Alanine (5)
Phosphoenolpyruvic acid (5)
Thymine (5)
Orotic acid (5)
L-Homoserine (5)
NADPH (5)
Nicotinic acid (5)
Succinic acid (5)

First Public Date

2014 (16)
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2022 (5)
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2018 (4)
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2013 (1)
2011 (1)

Classification

bacteria (45)

Study status

Completed (1)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (6)
Unknown experiment type (5)
Transcription profiling by RT-PCR (2)
Other (2)
Cell line - One-color microarray (1)
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Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
DNA-seq (1)
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Interventional (1)

Release Date

2020 (70)
2015 (57)
2023 (50)
2025 (48)
2021 (46)
2019 (46)
2014 (45)
2022 (41)
2011 (40)
2016 (39)
2024 (39)
2017 (38)
2018 (34)
2010 (32)
2012 (29)
2013 (28)
2008 (18)
2005 (11)
2007 (8)
2026 (6)
2000 (6)
2006 (5)
2009 (4)
2003 (4)
2001 (4)
1999 (4)
1998 (2)
2004 (1)
2002 (1)

Lab affiliation

Department of Biochemistry and Molecular Biology. University of Córdoba (1)
Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA 39762. (Lab Head) (1)
Department of Functional Genomics, University Medicine Greifswald (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (1)
Department of Microbiology and Immunology, University of Mississippi Medical Center, Jackson, Mississippi, United States of America (1)
Institute of Microbiology of the CAS, v. v. i., Videnska 1083, 142 20 Prague, Czech Republic (1)
J. Craig Venter Institute 9605 Medical Center Drive Rockville, MD 20850 (1)
J. Craig Venter Institute, Rockville, MD 20850 (1)
Quartier UNIL-Sorge Bâtiment Biophore Bureau : 2455 CH-1015 Lausanne (1)

Location

United States (1)

Keyword

Anti tumor necrosis alpha (1)
Pneumovax (1)
Pneumococcal vaccine (1)
Immunosuppression (1)
Heptavalent Pneumococcal Conjugate Vaccine (1)

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1918 pandemic influenza virus and pneumococcus co-infection results in activation of coagulation and widespread pulmonary microvascular thrombosis in mice and humans

To study the effects of secondary bacterial infection during 1918 pandemic H1N1 influenza virus infection, BALB/c mice were inoculated with the fully reconstructed 1918 influenza virus followed by inoculation with pneumococcus 72h later. To study the effects of secondary bacterial infection during 1...

ORGANISM(S): Mus musculus

2015-09-20 | E-GEOD-70445 | biostudies-arrayexpress

Serotype 4 pneumococcus

PRJEB42817 | ENA

Differentially expressed genes in pneumococcus-infected THP-1 monocytes

PRJNA676108 | ENA

Non-vaccine type penicillin nonsusceptible pneumococcus

PRJEB13827 | ENA

Differentially expressed genes in pneumococcus-infected THP-1 monocytes

To investigate the mechanistic role of NanA and Siglec-5 in this excessive inflammation, we systemically analyzed genes and signaling pathways differentially regulated in macrophages infected with wild type and NanA-deficient pneumococcus.

ORGANISM(S): Homo sapiens

2020-11-12 | GSE161269 | GEO

Inflammation induced by influenza virus impairs human innate immune control of pneumococcus.

Not available

S-EPMC6241853 | biostudies-literature

Unraveling the seasonal epidemiology of pneumococcus.

Not available

S-EPMC6358716 | biostudies-literature

Global transcriptional responses of pneumococcus to human blood components and cerebrospinal fluid.

Not available

S-EPMC9812572 | biostudies-literature

PM_2.5 impairs macrophage functions to exacerbate pneumococcus-induced pulmonary pathogenesis.