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TranscriptomicsTranscription profiling of human bronchial epithelial cells stimulated with the commensal bacterium S. salivarius K12 of the pathogens S. aureus, P. aeruginosa, or S. enteritidis
Human bronchial epithelial cells (16HBE14O-) were stimulated with the commensal bacterium S. salivarius K12, or the pathogens S. aureus, P. aeruginosa, or S. enteritidis (subtype Typhimurium) for 1 hour.
ORGANISM(S): Homo sapiens 
2008-10-30 | E-FPMI-13 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of water-stressed shoot and root transcriptomes of the emerging biomass and bioenergy species Arundo donax L.
This study reports the first water-stressed transcriptome of Arundo donax L. (giant reed), a wild species that is emerging as one of the most promising biomass/bionergy species in mediterranean climates. Synchronized cohorts of giant reads cutting grown in hydroponic culture were subjected to water ...
ORGANISM(S): Arundo donax 
2016-02-19 | E-MTAB-3769 | biostudies-arrayexpress
TranscriptomicsHalobacterium NRC-1 Diurnal experiment Dark 2
The wild type strain of Halobacterium salinarium strain NRC-1 was used for the diel growth experiments. Culturing from colony was done in a liquid Complete Medium (CM; at 42 ºC with shaking at 100 rpm). For experiment, cultures were started at an OD >> 0.001. Cultures were grown aerobically (sha...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-27 | E-GEOD-7710 | biostudies-arrayexpress
TranscriptomicsGene expression changes associated with progression of Irf8M-bM-^@M-^S/M-bM-^@M-^S CML-like disease into blast crisis after M-NM-2-catenin activation
Progression and disease relapse of chronic myeloid leukemia (CML) depends on leukemia-initiating cells (LIC) that resist treatment. Using mouse genetics, we observed that compound constitutive activation of M-NM-2-catenin and deletion of Irf8 results in progression of CML-like disease into fatal bla...
ORGANISM(S): Mus musculus 
2013-09-26 | E-GEOD-49054 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast TOP1 null strain bearing plasmids that express wild-type yeast Top1p or an inactive Y727F mutant enzyme and treated with camptothecin
To establish the effect of CPT in the regulation of global transcription in S. cerevisiae, we have used a yeast TOP1 null strain, JEL1Δtop1, bearing a low-copy number plasmid that expresses, under the control of the yeast TOP1 promoter, either a wild-type (wt) yeast Top1p (pCC10) or an inactive...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-01 | E-MEXP-1104 | biostudies-arrayexpress
no omics definedTranscription profiling of Medicago truncatula radicles incubated in polyethylene glycol solution and embryos at different time points after pollination to study dessication tolerance
Time course of the transcriptome of desiccation-sensitive 2.7-2.9 mm-long radicles of Medicago truncatula seeds at different time points during incubation in a polyethylene glycol (PEG) solution at -1.7 MPa and 10°C, resulting in a gradual re-establishment of desiccation tolerance. Gene profiling wa...
ORGANISM(S): Medicago truncatula 
2006-04-30 | E-MEXP-664 | biostudies-arrayexpress
TranscriptomicsA genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L.
Purpose: To identify high temperature, sailinity and drought-responsive miRNAs at genome wide level in B. juncea var varuna. Results: In this study four small RNA libraries viz. B. juncea control (BJC), B. juncea high temperature stressed (BJH), B. juncea salinity stressed (BJS) and B. juncea drough...
ORGANISM(S): Brassica juncea 
2014-08-20 | E-GEOD-53242 | biostudies-arrayexpress
GenomicsSATAY sequencing data from multiple biological and technical replicates of Saccharomyces cerevisiae
Transposon insertion site sequencing (TIS) is a powerful tool that has significantly advanced our knowledge of functional genomics. While providing valuable insights, these applications of TIS focus on (conditional) gene essentiality and neglect possibly interesting but subtle differences in the imp...
ORGANISM(S): Saccharomyces cerevisiae 
2024-11-18 | E-MTAB-14476 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast TOP1 null strain bearing plasmids that express wild-type yeast Top1p or CEN4-ARS1-URA3 yeast sequences
Influence of a wild type DNA Topoisomerase IB on global transcription profiles in exponentially growing S. cerecisiae cells in SC medium plus 2% of glucose.
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-01 | E-MEXP-1080 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of Sorghum bicolor 9d seedlings in response to osmotic stress and abscisic acid
This study utilized next generation sequencing technology (RNA-Seq) to examine the transcriptome of sorghum plants challenged with osmotic stress and exogenous abscisic acid (ABA) to elucidate those genes and gene networks that contribute to sorghum's tolerance to water-limiting environments with a ...
ORGANISM(S): Sorghum bicolor 
2011-10-26 | E-GEOD-30249 | biostudies-arrayexpress
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